Chung C D CD - OmicsDI

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Unknown (188)
Transcriptomics (16)
Metabolomics (2)
Proteomics (1)

Organisms

Homo sapiens (12)
Ogataea angusta (1)
Oryza sativa (1)
Pseudomonas aeruginosa PAO1 (1)
Oryza sativa Japonica Group (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (16)
MetaboLights (2)
pride (1)

Tissue

Cell culture (1)

Technology Type

Mass spectrometry (2)
Data-dependent acquisition (1)
Mass Spectrometry (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Q Exactive (1)

Publication Date

2021 (5)
2015 (3)
2013 (3)
2017 (1)
2014 (1)
2012 (1)
2011 (1)
2009 (1)
2024 (1)
2018 (1)
2025 (1)

CHEBI ID

CHEBI:72998 (2)
CHEBI:111517 (1)
CHEBI:116314 (1)
CHEBI:11805 (1)
CHEBI:12937 (1)
CHEBI:12962 (1)
CHEBI:131739 (1)
CHEBI:131740 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132538 (1)
CHEBI:132948 (1)
CHEBI:132994 (1)
CHEBI:133005 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)
CHEBI:133066 (1)
CHEBI:133077 (1)
CHEBI:133092 (1)
CHEBI:133096 (1)
CHEBI:133115 (1)
CHEBI:133119 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133176 (1)
CHEBI:133185 (1)
CHEBI:133186 (1)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4)* (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)

Study type

Transcription profiling by array (9)
Cell line - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Transcription profiling by tiling array (1)
ATAC-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of coding RNA (1)

Release Date

2018 (44)
2024 (21)
2021 (20)
2023 (15)
2022 (15)
2020 (12)
2025 (10)
2011 (9)
2016 (9)
2015 (8)
2010 (8)
2019 (6)
2017 (5)
2013 (5)
2012 (5)
2009 (5)
2014 (3)
2008 (3)
2026 (1)

Lab affiliation

Department of Laboratory Medicine Department of Bioengineering and Therapeutic Sciences University of California, San Francisco (1)

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Transcriptome profiling of Hansenula polymorpha in response to sulfur starvation and cadmium stress

Transcriptome profiling analysis of the Hansenula polymorpha MET4 gene deletion strain have been carried out to obtain comprehensive information on the HpMet4p-mediated regulatory networks in association with the cadmium (Cd) detoxification and sulfur regulation in H. polymorpha. Total RNA samples w...

ORGANISM(S): Ogataea angusta

2014-07-31 | E-GEOD-31197 | biostudies-arrayexpress

Lysine catabolic pathways in P. aeruginosa

Among multiple interconnected pathways for L-Lysine (L-Lys) catabolism in pseudomonads, Pseudomonas aeruginosa PAO1 employed the decarboxylase and the transaminase pathways. However, up till now several genes involved in the operation and regulation of these pathways were still missing. Transcriptom...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2015-12-09 | E-GEOD-75502 | biostudies-arrayexpress

The complete mitogenome of sea hares, Dolabella auricularia (Mollusca: Aplysiidae).

Not available

S-EPMC7800154 | biostudies-literature

Limitations of peptide retro-inverso isomerization in molecular mimicry.

Not available

S-EPMC2885236 | biostudies-literature

The complete mitogenome of nereid worm, Neanthes glandicincta (Annelida: Nereididae).

Not available

S-EPMC7799960 | biostudies-literature

Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae).