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MetabolomicsUntargeted metabolomics reveals temporal rhizosphere metabolic responses during colonization of citrus by Burkholderia strain B23
This study investigated temporal changes in the citrus rhizosphere metabolome during colonization by the beneficial bacterium Burkholderia vietnamiensis B23. Rhizosphere soil samples were collected from uninoculated plants and at 1, 3, and 9 days post inoculation (dpi) with B23, representing the ini...
2026-08-25 | MTBLS15457 | MetaboLights
MetabolomicsMolecular Docking and Dynamic Study of Ethanol Extract of Citrus sinensis as Keap-1 and NMDA inhibitor in Brain Injury

Traumatic brain injury is a significant cause of mortality in young adults and disability in all age groups. Secondary injury involving various processes such as oxidative stress, which induced neuronal apoptosis, ensued afterward. This study aimed to analyze the active compounds of Citrus sinens...

2023-01-02 | MTBLS5785 | MetaboLights
MetabolomicsMetabolome Analyses Provides Insights into Fruit Symptom Development Caused By Huanglongbing in Citrus reticulata Blanco cv. Wokan

Citrus Huanglongbing (HLB), caused by the phloem-limited bacterium ‘Candidatus Liberibacter asiaticus’ (CLas), is the most devastating diseases threatening citrus production worldwide. Infected fruit exhibited lopsided morphology and color inversion (‘Red-nose’ fruit), but the underlying mechani...

2025-11-25 | MTBLS13378 | MetaboLights
TranscriptomicsResponse of Sweet Orange (Citrus sinensis) to Candidatus Liberibacter asiaticus Infection
Citrus greening or huanglongbing (HLB) is a devastating disease of citrus. HLB is associated with the phloem-limited fastidious prokaryotic alpha-proteobacterium Candidatus Liberibacter spp. In this report, we used sweet orange (Citrus sinensis) leaf tissue infected with 'Ca. Liberibacter asiaticus'...
ORGANISM(S): Citrus sinensis 
2013-10-01 | E-GEOD-33003 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of closely related citrus varieties
An experiment was performed to predict citrus varieties by means of supervised learning algorithms applied to gene expression profiles
ORGANISM(S): Citrus clementina 
2007-07-23 | E-TABM-76 | biostudies-arrayexpress
TranscriptomicsDeep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
MicroRNAs (miRNAs) play a critical role in post-transcriptional gene regulation. miRNAs have been shown to control many genes involved in various biological and metabolic processes. Deep sequencing technologies have facilitated identification of species-specific or lowly expressed as well as conser...
ORGANISM(S): Citrus trifoliata 
2010-08-17 | E-GEOD-22089 | biostudies-arrayexpress
no omics definedTranscription profiling of petioles and laminar abscission zone enriched tissues from Citrus clementina following ethylene treatment
Transcription profiling of the ethylene-induced abscission process in laminar abscission zone enriched tissues and petiole of debladed mature citrus leaf explants. Samples taken at 0, 6, 12, 24 and 36h after ethylene treatment (10 ul/l) were compared.
ORGANISM(S): Citrus clementina 
2008-12-31 | E-MEXP-1428 | biostudies-arrayexpress
TranscriptomicsExpression data from citrus embryogenic calli with engineered carotenoid accumulation
Carotenoids have been demonstrated to be indispensable plant secondary metabolites that are involved in photosynthesis, antioxidation, and phytohormone biosynthesis. Carotenoids are likely involved in other biological functions that have yet to be discovered. In this study, we utilized genomic expre...
ORGANISM(S): Citrus reticulata x Citrus paradisi 
2014-09-23 | E-GEOD-61633 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of calyx abscission zone cells of citrus fruits and adjacent fruit rind cells during ethylene-promoted fruit abscission
Abscission is a cell separation process that takes place in particular positions of the plant body named abscission zones. In citrus, maturing fruits are shed through the calix abscission zone, which is composed by 10-15 cell layers located at the boundary between the calyx button and the fruit rind...
ORGANISM(S): Citrus sinensis 
2017-02-08 | E-MTAB-4538 | biostudies-arrayexpress
TranscriptomicsTranscriptional analysis of the sweet orange interaction with the citrus canker pathogens
We have used the citrus GeneChip array (GPL5731) to survey the transcription profiles of sweet orange in response to the bacterial pathogens Xanthomonas axonopodis pv. citri (Xac) and Xanthomonas axonopodis pv. aurantifolii (Xaa). Xac is the causal agent of the citrus canker disease on a wide range ...
ORGANISM(S): Citrus sinensis 
2010-05-25 | E-GEOD-10798 | biostudies-arrayexpress
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