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TranscriptomicsTranscription profiling by tiling array of yeast undergoing a series of carbon source shifts to discern how Set3C affects gene expression
Set3 complex (Set3C) binds histone H3 dimethylated at lysine 4 (H3K4me2) to mediate deacetylation of histones in 5Õ transcribed regions. To discern how Set3C affects gene expression, genome-wide transcription was analyzed in yeast undergoing a series of carbon source shifts. Deleting SET3 primarily ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-09-05 | E-MTAB-1250 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast using samples prepared with actinomycin D to exclude antisense artifacts
Recent transcription profiling studies have revealed an unanticipatedly large proportion of antisense transcription across eukaryotic and bacterial genomes. However, the extent and significance of antisense transcripts is controversial partly because experimental artifacts are suspected. Here, we pr...
ORGANISM(S): Saccharomyces cerevisiae 
2007-10-30 | E-TABM-361 | biostudies-arrayexpress
TranscriptomicsS.cerevisiae INO80 is required for promoter proximal nucleosome remodeling.
During transcription, nucleosomes are evicted from regulatory and coding regions yet chromatin structure is stable. Restoration of chromatin structure involves concerted action of chromatin modifying activities. Our analysis demonstrates a genome wide function of the INO80 remodeling complex for sta...
ORGANISM(S): Saccharomyces cerevisiae 
2016-12-24 | E-MTAB-1810 | biostudies-arrayexpress
TranscriptomicsExperimental relocation of the mitochondrial ATP9 gene to the nucleus reveals forces underlying mitochondrial genome evolution
Transcriptome profile of S. cerevisiae strains grown in rich ethanol/glycerol media, where the endogenous mitochondrial gene ATP9 has been deleted and relocated to the nucleus by expressing synthetic, codon-optimized versions of the Podospora anserina genes Atp9-5 and Atp9-7. The strains AMY7, AMY8,...
ORGANISM(S): Saccharomyces cerevisiae 
2012-08-28 | E-MTAB-1115 | biostudies-arrayexpress
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