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Unknown
(105618)
Genomics
(3405)
Transcriptomics
(681)
Proteomics
(667)
Metabolomics
(207)
Clinical
(136)
Genomic
(134)
Models
(22)
Methylation profiling
(20)
Other
(19)
Multiomics
(1)
Organisms
Homo sapiens
(701)
Mus musculus
(174)
Rattus norvegicus
(17)
Macaca fascicularis
(6)
Candida albicans
(5)
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(5)
Caenorhabditis elegans
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(4)
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Chlorocebus aethiops
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Candida albicans SC5314
(2)
Plasmodium falciparum
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(2)
Canis lupus
(1)
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(1)
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(1)
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(1)
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(1)
Atractylodes lancea
(1)
Enterobacter cloacae subsp. cloacae ATCC 13047
(1)
Taxus x media
(1)
Plasmodium vivax
(1)
Rattus
(1)
Escherichia coli CFT073
(1)
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(1)
Pseudomonas aeruginosa
(1)
Callithrix jacchus
(1)
Organisms
Homo sapiens
(1536)
Mus musculus
(641)
Rattus norvegicus
(26)
Danio rerio
(20)
Sus scrofa
(14)
Pseudomonas aeruginosa
(14)
Staphylococcus aureus
(14)
human gut metagenome
(13)
human metagenome
(10)
human vaginal metagenome
(7)
Escherichia coli
(7)
Klebsiella pneumoniae
(6)
Macaca fascicularis
(5)
Pseudomonas putida KT2440
(5)
Drosophila melanogaster
(4)
Caenorhabditis elegans
(4)
Canis lupus familiaris
(4)
Plasmodium vivax
(4)
Plasmodium falciparum
(4)
Equus caballus
(3)
human urinary tract metagenome
(3)
Candida albicans
(3)
mouse gut metagenome
(3)
Haemophilus sp. SZY H8
(2)
Anopheles
(2)
Plasmodium
(2)
Orthohepacivirus hominis
(2)
Plasmodium falciparum 3D7
(2)
Candida albicans SC5314
(2)
Enterococcus sp.
(2)
Repository
ENA
(3246)
pride
(535)
geo
(524)
biostudies-arrayexpress
(277)
MetabolomicsWorkbench
(138)
dbGaP
(134)
EGA
(77)
MetaboLights
(58)
PeptideAtlas
(51)
MassIVE
(46)
iProX
(26)
BioModels
(21)
GNPS
(11)
NODE
(4)
PanoramaPublic
(3)
ExpressionAtlas
(1)
GPMDB
(1)
jPOST
(1)
PMR
(1)
Tissue
Cell culture
(106)
Epithelial cell
(52)
Blood
(41)
Brain
(37)
Blood plasma
(35)
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(32)
Blood serum
(29)
Spinal cord
(24)
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(22)
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(21)
Heart
(18)
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(18)
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(17)
Blood
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(4)
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(1)
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(1)
Disease
Colorectal Neoplasms
(50)
Cancer
(31)
Colorectal cancer
(7)
Alzheimer's disease
(6)
Normal
(5)
Multiple myeloma
(5)
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(5)
Constipation
(4)
Malignant neoplasm of colon
(4)
Colonic Neoplasms
(4)
Rheumatoid arthritis
(3)
Neoplasms
(3)
Melanoma
(2)
Breast cancer
(2)
Functional intestinal disorder, unspecified
(2)
Carcinoma, Non-Small-Cell Lung
(2)
Stage II to III colorectal cancer survivors
(2)
Progressive supranuclear palsy
(1)
Lymph node-negative breast cancer
(1)
Cirrhosis
(1)
Limited scleroderma
(1)
Non-small cell lung cancer
(1)
Adenocarcinoma
(1)
Metastatic adenocarcinoma of the colon or rectum
(1)
Diverticular disease of intestine
(1)
Infertility
(1)
Respiratory Insufficiency
(1)
Oesophageal cancer
(1)
Vaginal stenosis following radiotherapy
(1)
Folliculitis
(1)
Technology Type
Mass Spectrometry
(670)
Shotgun proteomics
(279)
Bottom-up proteomics
(127)
ESI
(105)
Affinity purification coupled with mass spectrometry proteomics
(52)
Mass spectrometry
(44)
Data-dependent acquisition
(42)
Gel-based experiment
(40)
EI
(30)
Data-independent acquisition
(22)
SWATH MS
(20)
Top-down proteomics
(17)
SRM/MRM
(15)
NMR spectroscopy
(13)
Mass spectrometry assay
(5)
All-ion fragmentation
(5)
MSE
(4)
Illumina HiSeq 2000
(3)
NMR
(3)
Illumina HiSeq 2000, ILLUMINA
(2)
DiaPASEF
(2)
HDMSE
(2)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
ILLUMINA, NextSeq 500
(1)
HiSeq X Ten, ILLUMINA, Illumina HiSeq 2500
(1)
Illumina MiSeq, Illumina HiSeq 2000
(1)
Illumina MiSeq
(1)
MALDI
(1)
SomaScan affinity proteomics
(1)
Glycoproteomics
(1)
Instrument Platform
Q Exactive
(15)
Illumina HiSeq 2000
(13)
Orbitrap Fusion Lumos
(13)
Illumina NovaSeq 6000
(12)
Illumina HiSeq 4000
(9)
Orbitrap Fusion
(6)
NextSeq 500
(5)
MaXis
(3)
NA
(2)
NextSeq 2000
(2)
Illumina HiSeq 2500
(2)
QTOF - POSITIVE
(2)
QTOF - NEGATIVE
(2)
MaXis II
(2)
Chromium Controller (10X)
(1)
HP desktop
(1)
Fluidics workstation
(1)
Hybridization oven
(1)
454 GS FLX Titanium
(1)
None
(1)
IScan
(1)
Illumina Beadstaition
(1)
Agilent scanner
(1)
418 [Affymetrix]
(1)
Scanning hardware
(1)
Illumina NovaSeq X
(1)
10x Genomics Chromium Controller
(1)
Ion Torrent Proton
(1)
Illumina MiSeq
(1)
Instrument
(1)
Publication Date
2025
(171)
2024
(165)
2023
(153)
2014
(126)
2022
(125)
2026
(121)
2021
(106)
2018
(88)
2019
(72)
2015
(70)
2020
(65)
2017
(48)
2016
(45)
2012
(43)
2013
(41)
2011
(31)
2010
(21)
2008
(21)
2009
(12)
2005
(8)
2007
(4)
2006
(2)
2004
(1)
UNIPROT ID/AC
P35747
(51)
P27425
(51)
B5BV13
(51)
Q95M34
(50)
P01959
(50)
B5BV09
(49)
P60708
(48)
O97973
(47)
O97641
(45)
Q28372
(43)
Q9N1X2
(42)
P83704
(41)
P68226
(41)
B7XH73
(41)
C6L1J5
(40)
A2Q0Z1
(40)
Q9TUX5
(39)
P62327
(39)
P00559
(39)
Q6DTK4
(38)
P00443
(38)
B8Y403
(38)
P02561
(37)
A8J714
(37)
B3IVM1
(36)
A2Q0Z2
(36)
A2Q0Z0
(36)
Q9GKX8
(35)
O97677
(35)
P29476
(1)
ENSEMBL ID
ENSECAG00000021580
(51)
ENSECAG00000014414
(51)
ENSECAG00000009556
(51)
ENSECAG00000004960
(51)
ENSECAP00000013223
(50)
ENSECAP00000007368
(50)
ENSECAG00000021499
(50)
ENSECAG00000019927
(50)
ENSECAG00000011847
(50)
ENSECAG00000004973
(50)
ENSECAG00000001810
(50)
ENSECAP00000003495
(49)
ENSECAG00000014858
(49)
ENSECAG00000009752
(49)
ENSECAG00000006095
(49)
ENSECAG00000000207
(48)
ENSECAG00000010481
(46)
ENSECAP00000007504
(45)
ENSECAG00000012096
(44)
ENSECAG00000000548
(44)
ENSECAG00000024571
(43)
ENSECAG00000004201
(43)
ENSECAG00000019900
(42)
ENSECAG00000016475
(42)
ENSECAG00000015581
(41)
ENSECAG00000021882
(40)
ENSECAG00000021116
(40)
ENSECAG00000014197
(40)
ENSECAG00000003345
(40)
ENSECAG00000000841
(40)
CHEBI ID
CHEBI:16480
(2)
CHEBI:29034
(2)
CHEBI:29033
(2)
CHEBI:17627
(2)
CHEBI:16349
(2)
CHEBI:15379
(2)
CHEBI:18009
(2)
CHEBI:16474
(2)
CHEBI:24933
(1)
CHEBI:14484
(1)
CHEBI:6074
(1)
CHEBI:24932
(1)
CHEBI:1687
(1)
CHEBI:42317
(1)
CHEBI:1567
(1)
CHEBI:23616
(1)
CHEBI:20097
(1)
CHEBI:13960
(1)
CHEBI:23093
(1)
CHEBI:3593
(1)
CHEBI:57884
(1)
CHEBI:23094
(1)
CHEBI:3588
(1)
CHEBI:1566
(1)
CHEBI:20095
(1)
CHEBI:14734
(1)
CHEBI:25843
(1)
CHEBI:3590
(1)
CHEBI:57802
(1)
CHEBI:13961
(1)
Metabolite Name
Proline
(9)
Glutamate
(9)
Creatinine
(9)
Creatine
(9)
Leucine
(8)
Taurine
(8)
Kynurenine
(8)
Hypoxanthine
(8)
Carnitine
(8)
Arginine
(8)
Histidine
(8)
Phenylalanine
(8)
Tyrosine
(8)
Threonine
(8)
Methionine
(8)
Glucose
(8)
Choline
(8)
Glutamine
(8)
Citrate
(8)
Alanine
(8)
Leucine
(8)
Citric acid
(8)
Glutamine
(8)
Uric acid
(8)
Creatine
(8)
Glycine
(7)
Uridine
(7)
Tryptophan
(7)
Serine
(7)
Pseudouridine
(7)
First Public Date
2024
(395)
2014
(375)
2025
(329)
2023
(302)
2026
(281)
2022
(268)
2021
(255)
2020
(213)
2019
(197)
2017
(145)
2015
(145)
2018
(142)
2016
(99)
2013
(97)
2012
(2)
2011
(1)
Modelling Approach
Ordinary differential equation model
(14)
Computational model
(4)
Constraint-based model
(2)
Study status
Completed
(71)
Recruiting
(40)
Terminated
(7)
Active, not recruiting
(7)
Not yet recruiting
(4)
Withdrawn
(3)
Not provided
(3)
Enrolling by invitation
(1)
Lab affiliation
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA
(12)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria
(9)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4
(9)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA
(8)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA
(8)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905
(7)
Mayo Clinic
(7)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany.
(7)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA
(7)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States
(7)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States
(7)
Cleveland Clinic
(6)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205
(5)
Department of Laboratory Medicine and Pathology, Mayo Clinic
(5)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia
(5)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA
(5)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam
(4)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences
(4)
Department of Laboratory Medicine and Pathology & Center for Individualized Medicine Mayo Clinic Rochester MN 55905, USA
(4)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 D-82152 Martinsried
(4)
German Cancer Research Center (DKFZ) Heidelberg University Clinic
(3)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio
(3)
Cleveland Clinic Lerner Research Institute
(3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences
(2)
German Cancer Research Center Heidelberg University Clinic Heidelberg
(2)
Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL 34987, USA
(2)
Professor Laboratory Medicine and Pathology Mayo Clinic, Rochester, MN, USA
(2)
ERA Chair laboratory, Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Croatia
(2)
Genetics Unit, Department of Biomedical Sciences, Faculty of Medicine, Casanova 143, 08036 Barcelona, Spain
(2)
Head of Laboratory Neuro-Oncology, Clinical and Cancer Proteomics, Neurology
(2)
Tags
pathogen
(106)
pathogen:bacterium
(79)
xref:PubMed:34709885
(13)
xref:PubMed:35764649
(13)
pathogen:protozoan
(13)
xref:PubMed:24594983
(10)
xref:PubMed:39966375
(8)
xref:PubMed:37597632
(8)
pathogen:virus
(8)
xref:PubMed:26484077
(7)
xref:PubMed:24121163
(7)
xref:PubMed:26633895
(7)
xref:PubMed:33436389
(6)
xref:PubMed:39189614
(6)
xref:PubMed:39631069
(6)
xref:PubMed:27749787
(6)
xref:PubMed:22855427
(6)
xref:PubMed:39805830
(6)
xref:PubMed:41147417
(6)
xref:PubMed:38948714
(6)
pathogen:fungus
(6)
xref:PubMed:41730984
(5)
xref:PubMed:20923822
(5)
xref:PubMed:28173075
(5)
xref:PubMed:26503816
(5)
xref:PubMed:36399508
(5)
xref:PubMed:33096636
(5)
xref:PubMed:29587824
(5)
xref:PubMed:34910509
(5)
xref:PubMed:39970333
(5)
Keyword
Colonoscopy
(5)
Colorectal cancer screening
(4)
Capecitabine
(4)
Cetuximab
(4)
Non-cancer pain
(3)
Opioid-induced
(3)
Alvimopan
(3)
Opioids
(3)
Natural History
(3)
Patient education
(3)
Gastrointestinal
(3)
Cancer screening
(3)
Screening
(3)
Irinotecan
(3)
Leucovorin
(3)
Bevacizumab
(3)
Fluorouracil
(3)
Oxaliplatin
(3)
Encorafenib
(2)
Telemedicine
(2)
Aldesleukin
(2)
Text message
(2)
Liver Cancer
(2)
Fludarabine
(2)
ABBV-400
(2)
Colonic Diseases
(2)
Cyclophosphamide
(2)
Rectal Diseases
(2)
Digestive System Diseases
(2)
Gastrointestinal Diseases
(2)
IsPrivate
False
(21)
Model Flag
Non Miriam
(4)
Non Kinetic
(1)
Submitter Keywords
Ersilia
(4)
Machine Learning Model
(4)
Immuno-oncology
(3)
Oncology
(1)
FROG
(1)
Not Peer Reviewed
(1)
Classification
bacteria
(79)
protozoa
(13)
viruses
(8)
fungi
(6)
Modification
2x(15)N labeled L-lysine
(3)
4x(15)N labeled L-arginine
(3)
MTRAQ heavy
(1)
4x(2)H labeled dimethylated residue
(1)
42.010565
(1)
15.994915
(1)
6x(2)H labeled dimethylated L-arginine
(1)
4
(1)
57.021464
(1)
4-tetrahydrothiazine-3-carboxylic acid
(1)
Not available
(1)
Study type
Transcription profiling by array
(177)
Interventional
(102)
RNA-seq of coding RNA
(34)
Observational
(31)
RNA-seq of coding RNA from single cells
(11)
Methylation profiling by array
(10)
Comparative genomic hybridization by array
(8)
ChIP-seq
(5)
Unknown experiment type
(4)
Methylation profiling by high throughput sequencing
(4)
Transcription profiling by RT-PCR
(3)
RNA-seq of non coding RNA
(3)
Observational patient registry
(3)
RNA-seq of non coding RNA from single cells
(2)
Human - One-color microarray
(2)
Animal - High-throughput sequencing
(2)
Genotyping by array
(2)
Animal - One-color microarray
(1)
ChIP-chip by tiling array
(1)
Cell line - One-color microarray
(1)
Cell line - High-throughput sequencing
(1)
Bisulfite-seq
(1)
4C
(1)
MicroRNA profiling by array
(1)
DNA-seq
(1)
Proteomic profiling by array
(1)
RNA-seq of total RNA
(1)
Release Date
2022
(13093)
2021
(11964)
2023
(11334)
2025
(11085)
2024
(9629)
2020
(9294)
2019
(6858)
2018
(5951)
2017
(4959)
2016
(4297)
2015
(3861)
2014
(3159)
2013
(2085)
2012
(1713)
2026
(1599)
2011
(1441)
2010
(1119)
2009
(839)
2008
(564)
2007
(260)
2006
(202)
2005
(153)
2004
(108)
2003
(95)
2001
(72)
2002
(54)
2000
(49)
1999
(26)
1998
(16)
1997
(5)
Location
United States
(53)
Australia
(27)
Germany
(12)
United Kingdom
(11)
Canada
(10)
France
(9)
Netherlands
(8)
Taiwan
(6)
China
(6)
South Korea
(6)
Spain
(6)
New Zealand
(5)
Denmark
(5)
Poland
(5)
Iran
(4)
Finland
(4)
Sweden
(4)
Japan
(4)
Norway
(3)
Turkey
(3)
Italy
(3)
Belgium
(3)
Brazil
(3)
Austria
(3)
Switzerland
(3)
South Africa
(2)
Slovakia
(2)
Ireland
(2)
India
(2)
Puerto Rico
(2)
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Lactiplantibacillus plantarum strain:Vaginal clinic isolate | isolate:Vaginal clinic isolate
Lactiplantibacillus plantarum strain:Vaginal clinic isolate | isolate:Vaginal clinic isolate Genome sequencing
PRJNA886766
|
ENA
Cite
Post-COVID-19 Syndrome (Long Haul Syndrome): Description of a Multidisciplinary Clinic at Mayo Clinic and Characteristics of the Initial Patient Cohort.
Not available
S-EPMC8112396
|
biostudies-literature
Cite
Preliminary Normative Standards of the Mayo Clinic Esophagectomy CONDUIT Tool.
Not available
S-EPMC6978604
|
biostudies-literature
Cite
Impact of direct-to-consumer predictive genomic testing on risk perception and worry among patients receiving routine care in a preventive health clinic.
Not available
S-EPMC3184022
|
biostudies-literature
Cite
Outcomes of COVID-19 With the Mayo Clinic Model of Care and Research.
Not available
S-EPMC7831394
|
biostudies-literature
Cite
Emergency Department Visits Before Cancer Diagnosis Among Women at Mayo Clinic.
Not available
S-EPMC11002794
|
biostudies-literature
Cite
clinic collection strains
clinic collection strains Raw sequence reads
PRJNA1054306
|
ENA
Cite
Characteristics and utilisation of the Mayo Clinic Biobank, a clinic-based prospective collection in the USA: cohort profile.
Not available
S-EPMC6858142
|
biostudies-literature
Cite
Prevalence of SARS-CoV-2 Antibodies in a Multistate Academic Medical Center.
Not available
S-EPMC7997730
|
biostudies-literature
Cite
Mayo Clinic Adult Diffuse Glioma Illumina Oncoarray SNP data
Mayo Clinic Adult Diffuse Glioma Illumina Oncoarray SNP data
PRJNA872259
|
ENA
Cite
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