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MetabolomicsMetabolic profiling of Candida clinical isolates of different species and infection sources

Candida species are the most common cause of opportunistic fungal infections. Rapid identification and novel approaches for the characterization of these fungi are of great interest to improve the diagnosis and the knowledge about their pathogenic properties. This study aimed to characte...

2024-07-09 | MTBLS1978 | MetaboLights
MetabolomicsPseudomonas aeruginosa cystic fibrosis clinical isolates volatile metabolomics
Not available
ORGANISM(S): Pseudomonas aeruginosa 
ST001414 | MetabolomicsWorkbench
MetabolomicsMetabolic Phenotyping and Strain Characterisation of Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients Using Rapid Evaporative Ionisation Mass Spectrometry
Rapid evaporative ionisation mass spectrometry (REIMS) is a novel technique for the real-time analysis of biological material. It works by conducting an electrical current through a sample, causing it to rapidly heat and evaporate, with the analyte containing vapour channelled to a mass spectrometer...
2022-01-26 | MTBLS644 | MetaboLights
MetabolomicsAnalysis of 3274 bacterial isolates by rapid evaporative ionisation mass spectrometry (REIMS)

Analysis of bacterial composition using rapid evaporative ionisation mass spectrometry (REIMS) allows for the detection of metabolites that may be considered specific to particular taxons. This database of 3274 isolates covering gram positive and negative bacteria across 5 phyla, 12 classes, 24 o...

2025-06-13 | MTBLS10328 | MetaboLights
GenomicsPseudomonas aeruginosa strain:clinical isolates
RNA-Seq study on Pseudomonas aeruginosa clinical isolates
PRJNA231236 | ENA
TranscriptomicsBasal in vitro transcriptomes of Mycobacterium tuberculosis complex (MTC) clinical isolates
This study uses microarray analyses to examine baseline gene expression profiles for Mycobacterium tuberculosis complex clinical isolates relative to reference strain CDC1551 during log phase growth in vitro in 7H9 broth. For this in vitro analyses, log-phase mycobacteria in starter cultures grown t...
ORGANISM(S): Mycobacterium tuberculosis 
2010-07-08 | E-GEOD-21111 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of Bordetella pertussis clinical isoltates circultating in Senegal
Genomic content of Bordetella pertussis clinical isolates circulating in Senegal
ORGANISM(S): Bordetella pertussis 
2009-01-08 | E-MEXP-1674 | biostudies-arrayexpress
TranscriptomicsGene expression diversity among Mycobacterium tuberculosis clinical isolates
While several groups, including our own, have examined variability of M. tuberculosis at the DNA level, this is the first systematic survey of variability in mRNA expression among clinical isolates of M. tuberculosis. Genes whose expression varies among isolates when assayed under a single growth co...
ORGANISM(S): Mycobacterium tuberculosis 
2005-08-26 | E-GEOD-3201 | biostudies-arrayexpress
ProteomicsProteome and carbon flux analysis of Pseudomonas aeruginosa clinical isolates from different infection sites
Pseudomonas aeruginosa is known as opportunistic pathogen frequently isolated from different infection sites such as burned wounds, lung and urinary tract. To shed light on the expression rates of cytoplasmic P. aeruginosa proteins, commonly expressed by eleven different clinical isolates, absolute ...
ORGANISM(S): Pseudomonas aeruginosa 
2016-03-29 | PXD002373 | Pride
Clinical isolates Gel-free and label-free proteomics 
TranscriptomicsGenomics-based molecular epidemiology of human clinical and feedlot cattle C. jejuni isolates in Alberta, Canada
Oligonucleotide DNA microarrays were used as a platform to compare C. jejuni isolates from feedlot cattle and human clinical cases from Alberta. Comparative genomic hybridization (CGH) analysis was performed on 87 isolates (46 bovine, 41 human) obtained within the same geographical regions and time ...
ORGANISM(S): Campylobacter jejuni 
2010-05-18 | E-GEOD-13228 | biostudies-arrayexpress
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