Cnr - OmicsDI

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Unknown (10557)
Genomics (704)
Proteomics (60)
Transcriptomics (31)
Metabolomics (10)
Models (7)
Genomic (3)
Methylation profiling (1)
Other (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (54)
Alteromonadales (54)
Bacteria (54)
Canis lupus familiaris (54)
Carya cathayensis (54)
Ectopseudomonas oleovorans CECT 5344 (54)
Ensifer adhaerens (54)
Enterococcus faecalis (54)
Globicatella sanguinis (54)
Halictus scabiosae (54)
Histomonas meleagridis (54)
Human immunodeficiency virus 1 (54)
Listeria monocytogenes (54)
Methylohalobius crimeensis 10Ki (54)
Mus musculus (54)
Homo sapiens (21)
Mus musculus (12)
Solanum lycopersicum (10)
Solanum pimpinellifolium (2)
Gallus gallus (2)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Phaseolus vulgaris (1)
Cynara cardunculus var. scolymus (1)
Fusarium acuminatum (1)
Rhizopus stolonifer (1)
Botrytis cinerea (1)
Solanum lycopersicum var. cerasiforme (1)
Lactuca sativa (1)
Danio rerio (1)

Organisms

Homo sapiens (114)
Mus musculus (60)
bioreactor metagenome (18)
human gut metagenome (10)
Sinorhizobium meliloti (7)
Solanum lycopersicum (6)
Rattus norvegicus (6)
Danio rerio (5)
Helicobacter pylori G27 (4)
freshwater metagenome (4)
Vitis vinifera (4)
rabbit gut metagenome (3)
milk metagenome (3)
Cynara cardunculus (3)
human vaginal metagenome (3)
sponge metagenome (3)
biofilm metagenome (3)
food metagenome (3)
soil metagenome (3)
Gigaspora margarita (2)
Streptomyces ambofaciens ATCC 23877 (2)
human nasopharyngeal metagenome (2)
Triticum turgidum subsp. durum (2)
Planobispora rosea (2)
human metagenome (2)
Phaseolus vulgaris (2)
gut metagenome (2)
Escherichia coli (2)
Arabidopsis thaliana (2)
mouse gut metagenome (2)

Repository

ENA (687)
pride (54)
biostudies-arrayexpress (25)
geo (21)
BioModels (7)
MetaboLights (7)
MassIVE (5)
dbGaP (3)
EGA (2)
EVA (2)
GNPS (2)
jPOST (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (8)
Plant cell (6)
Leaf (5)
Milk (2)
Pericarp (2)
Permanent cell line cell (2)
White adipose tissue (2)
Whole body (2)
HeLa cells (1)
B cell (1)
Blood plasma (1)
Brain (1)
Brown adipose tissue (1)
Colostrum (1)
Embryonic stem cell (1)
Epithelial cell (1)
Fibroblast (1)
Fruit (1)
Hairy root culture (1)
HeLa cell (1)
Kidney (1)
Lung (1)
Melanocyte (1)
Nerve ring (1)
Plant (1)
Rosette (1)
Skin (1)
Spleen (1)

Disease

Alzheimer's disease (1)
Breast cancer (1)
Cockayne syndrome (1)
Glioblastoma (1)
Melanoma (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (28)
Gel-based experiment (16)
Bottom-up proteomics (11)
Data-dependent acquisition (8)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (2)
NMR spectroscopy (1)
ESI (1)
SRM/MRM (1)

Instrument Platform

- (2)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
LTQ XL|1000854 (1)
ITMS (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL ETD (1)
Orbitrap Exploris 120 (1)
Orbitrap Lumos (1)
QTof (1)
Liquid Chromatography MS - - - LTQ Orbitrap Velos (Thermo Scientific) (1)
Thermo LTQ XL linear ion trap (1)
UHPLC-DAD-HR-MS/MS (1)
Liquid Chromatography MS - negative- reverse phase (1)
Liquid Chromatography MS - positive- reverse phase (1)
Gas Chromatography MS - (1)
Q Exactive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (21)
2021 (14)
2023 (13)
2026 (12)
2024 (11)
2020 (8)
2015 (6)
2010 (6)
2019 (6)
2017 (6)
2012 (5)
2022 (4)
2013 (4)
2014 (2)
2009 (2)
2018 (2)
2005 (1)

UNIPROT ID/AC

Q13884 (1)
Q13424 (1)
Q92629 (1)
Q13326 (1)
Q16586 (1)
Q16585 (1)
P33151 (1)
P16284 (1)
P29460 (1)
P19474 (1)
Q9Y210 (1)
P04798 (1)
P49116 (1)
P04839 (1)
Q07325 (1)
Q15399 (1)
Q8WZ42 (1)
P29475 (1)
P68431 (1)
O15273 (1)
Q9Y5B0 (1)
P50461 (1)
O94886 (1)
Q92765 (1)
Q9UBV4 (1)
Q9UHL9 (1)
O60565 (1)
Q9UKX2 (1)
Q969V6 (1)
Q99527 (1)

ENSEMBL ID

ENST00000261769 (1)
ENST00000227507 (1)
ENST00000242261 (1)
ENST00000263341 (1)

CHEBI ID

CHEBI:16977 (3)
CHEBI:15428 (3)
CHEBI:17750 (3)
CHEBI:17053 (3)
CHEBI:17191 (3)
CHEBI:17521 (2)
CHEBI:17992 (2)
CHEBI:33508 (2)
CHEBI:48430 (2)
CHEBI:60645 (2)
CHEBI:17822 (2)
CHEBI:16680 (2)
CHEBI:24298 (2)
CHEBI:27570 (2)
CHEBI:28300 (2)
CHEBI:15676 (2)
CHEBI:16530 (2)
CHEBI:48432 (1)
CHEBI:85721 (1)
CHEBI:37328 (1)
CHEBI:16412 (1)
CHEBI:16480 (1)
CHEBI:15551 (1)
CHEBI:29103 (1)
CHEBI:26523 (1)
CHEBI:17489 (1)
CHEBI:29108 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:15422 (1)

Metabolite Name

Tryptophan (3)
Glutamine (3)
Sucrose (3)
Stigmasterol (2)
Xylose (2)
Arabinose (2)
Maltose (2)
Ribose (2)
Beta-sitosterol (2)
Serine (2)
Proline (2)
Nicotinamide (2)
Lysine (2)
Hypotaurine (2)
Guanosine (2)
Guanine (2)
Cytosine (2)
Betaine (2)
Asparagine (2)
Arginine (2)
Adenine (2)
Histidine (2)
Phenylalanine (2)
Tyrosine (2)
Fructose (2)
Mannose (2)
Threonine (2)
Methionine (2)
Glucose (2)
Alanine (2)

First Public Date

2024 (105)
2025 (75)
2020 (66)
2019 (60)
2021 (57)
2023 (54)
2022 (54)
2026 (53)
2017 (42)
2018 (36)
2014 (35)
2015 (26)
2016 (14)
2013 (10)

Modelling Approach

Computational model (2)
Ordinary differential equation model (2)
Biochemical network (1)
Other (1)
Constraint-based model (1)

Lab affiliation

Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy (4)
Institute for the Animal Production System in the Mediterranean Environment, National Research Council, 80055 Portici (Naples), Italy (2)
Institute of Food Sciences - National Research Council (CNR), Avellino, Italy (2)
Proteomics, Metabolomics and Mass Spectrometry Laboratory,ISPAAM, National Research Council, P.le E. Fermi 1, 80055 Portici, Italy (2)
UMR1332, INRAE Nouvelle-Aquitaine Bordeaux, France. (2)
CNR (1)
CNR ISPAAM , Proteomics, Metabolomics and Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment, National Research Council, 80055 Portici, Italy. (1)
CNR-ISPAAM (1)
Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA (1)
Department of Biomedical Sciences, University of Padova, Italy CNR-Neuroscience Institute, Italy Padova Neuroscience center, University of Padova, Italy (1)
ERTP (Environmental Research and Technology Platform), Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 41, Rue du Brill, L-4422 Belvaux, Luxembourg (1)
ITB-CNR, Italy (1)
Institute for Biological Resources and Marine Biotechnologies (CNR), Italian National Research Council, Messina, Italy (1)
Institute for Biological Resources and Marine Biotechnology (IRBIM) (CNR), Spianata San Raineri, 86, 98121 Messina, Italy (1)
Institute for Biomedical Technologies (ITB-CNR) (1)
Institute for Biomedical Technologies, National Research Council (ITB-CNR) (1)
Institute for Sustainable Plant Protection of the National Research Council of Italy, IPSP - CNR (1)
Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, 80055 Portici, Italy. (1)
Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Naples ITALY (1)
Institute of Biophysics, CNR Unit at Trento, Via Sommarive 18, 38123 Povo (Trento), Italy (1)
Institute of Food Sciences, National Research Council, Avellino, Italy (1)
Institute of Polar Research, ISP-CNR, Messina, Italy (1)
Institute of the Science of Food Production (ISPA) – National Research Council, Largo Braccini 2, 10095 Grugliasco, TO, Italy (1)
Istituto di Biomedicina ed Immunologia Molecolare (IBIM) CNR, Via U. La Malfa 153, Palermo 90146, Italy (1)
Istituto di Fisiologia Clinica - IFC, CNR-Pisa (1)
Istituto di Genetica Molecolare CNR, Pavia 27100, Italy (1)
Istituto per il Sistema Produzione Animale in Ambiente (ISPAAM) , Consiglio Nazionale delle Ricerche ITALY (1)
Istituto per il Sistema Produzione Animale in Ambiente Mediterraneo (1)
Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche, IPSP-CNR, Strada delle Cacce 73, 10135 Turin, Italy (1)
Italian Institute of Technology (1)

IsPrivate

False (7)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (14)
viruses (2)
fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
Not available (1)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (3)
Genotyping by array (2)
RNA-seq of non coding RNA (2)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (1291)
2023 (1205)
2021 (1146)
2025 (1074)
2020 (949)
2024 (838)
2019 (719)
2018 (535)
2017 (529)
2016 (462)
2015 (406)
2014 (333)
2013 (226)
2012 (170)
2026 (148)
2011 (125)
2010 (96)
2009 (81)
2008 (52)
2007 (42)
2006 (35)
2005 (33)
2004 (20)
2003 (20)
2001 (15)
2000 (12)
2002 (8)
1999 (5)
1998 (4)
1997 (1)

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Gene profiling of v-Src transformed primary chicken cells

Cell transformation by the Src tyrosine kinase is characterized by extensive changes in gene expression. To describe these changes, investigators have relied extensively on the study of immortalized rodent cell lines or heterogeneous tumor samples that limit the identification of differentially exp...

ORGANISM(S): Gallus gallus

2010-02-21 | E-GEOD-14489 | biostudies-arrayexpress

CNR

PRJNA480380 | ENA

Andes Virus: Genome sequencing by Institut Pasteur_ERI-CIBU-CNR, Institut Pasteur

Andes Virus: Genome sequencing by Institut Pasteur_ERI-CIBU-CNR, Institut Pasteur, Paris, France

PRJEB113175 | ENA

An exceptionally high wave at the CNR-ISMAR oceanographic tower in the Northern Adriatic Sea.

Not available

S-EPMC7846790 | biostudies-literature

DNA hypomethylation enables the transcriptional repressor SlSPL-CNR to control fruit flavor ester biosynthesis

DNA hypomethylation is traditionally associated with gene activation. Here we show that DNA hypomethylation permits the binding of a transcriptional repressor SlSPL-CNR, leading to gene silencing in tomato. SlSPL-CNR exhibits methylation-sensitive DNA binding and preferentially occupies unmethylated...

ORGANISM(S): Solanum lycopersicum

2026-06-18 | GSE329250 | GEO

CNR improvement of MP2RAGE from slice encoding directional acceleration.

Not available

S-EPMC5549560 | biostudies-literature

Cnr interferes with dimerization of the replication protein alpha in phage-plasmid P4.

Not available

S-EPMC29674 | biostudies-literature

Treatment paths for localised prostate cancer in Italy: The results of a multidisciplinary, observational, prospective study (Pros-IT CNR).

Not available

S-EPMC6824566 | biostudies-literature

Biological and Cellular Functions of the Microdomain-Associated FWL/CNR Protein Family in Plants.