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TranscriptomicsWidespread, focal copy number variations (CNV) in Trypanosoma cruzi strains
Trypanosoma cruzi is a protozoan parasite and the etiologic agent of Chagas disease, an important public health problem in Latin America. T. cruzi is diploid, almost exclusively asexual, and displays an extraordinarily diverse population structure both genetically and phenotypically. Yet, to date ...
ORGANISM(S): Trypanosoma cruzi 
2011-08-05 | E-GEOD-23576 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 33 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-30312 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 14 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28101 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 18 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28102 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human660W-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28103 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni1-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28104 | biostudies-arrayexpress
TranscriptomicsMaize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
Following the domestication of maize over the past ,10,000 years, breeders have exploited the extensive genetic diversity of this species to mold its phenotype to meet human needs. The extent of structural variation, including copy number variation (CNV) and presence/absence variation (PAV), which a...
ORGANISM(S): Zea mays 
2009-11-19 | E-GEOD-16938 | biostudies-arrayexpress
GenomicsCNV in spruce
CNV in spruce
PRJNA357252 | ENA
TranscriptomicsInfluence of ATM-mediated DNA damage response on genomic variation in human induced pluripotent stem cells (Affymetrix CNV)
Genome instability is a potential limitation to the research and therapeutic application of induced pluripotent stem cells (iPSCs). Observed genomic variations reflect the combined activities of DNA damage, cellular DNA damage response (DDR), and selection pressure in culture. To understand the cont...
ORGANISM(S): Homo sapiens 
2016-03-29 | E-GEOD-78715 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human1Mv1_C)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28092 | biostudies-arrayexpress
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