Co-regulator - OmicsDI

Show results for

Unknown (4393)
Transcriptomics (2381)
Genomics (1841)
Proteomics (212)
Other (66)
Methylation profiling (17)
Metabolomics (15)
Models (6)

Organisms

Homo sapiens (1244)
Mus musculus (1025)
Arabidopsis thaliana (117)
Drosophila melanogaster (86)
Rattus norvegicus (72)
Saccharomyces cerevisiae (56)
Danio rerio (26)
Caenorhabditis elegans (19)
Schizosaccharomyces pombe (19)
Vibrio harveyi (17)
Escherichia coli (16)
Candida albicans (11)
Oryza sativa (11)
Gallus gallus (9)
Zea mays (9)
Streptomyces coelicolor (8)
Vibrio cholerae (8)
Bos taurus (7)
Oryza sativa Japonica Group (7)
Escherichia coli str. K-12 substr. MG1655 (6)
Saccharomyces cerevisiae SK1 (5)
Bacillus subtilis subsp. subtilis str. 168 (5)
Vibrio parahaemolyticus (5)
Aspergillus flavus (5)
Xenopus laevis (4)
Escherichia coli K-12 (4)
Canis lupus familiaris (4)
Sinorhizobium meliloti (4)
Neogale vison (1)
Saccharomyces (1)

Organisms

Homo sapiens (449)
Mus musculus (428)
Arabidopsis thaliana (43)
Drosophila melanogaster (25)
Saccharomyces cerevisiae (12)
Danio rerio (11)
Vibrio harveyi (9)
Rattus norvegicus (8)
Plasmodium falciparum (6)
Candida albicans (5)
Ciona robusta (4)
Schizosaccharomyces pombe (4)
Mus (4)
Streptococcus gordonii str. Challis (3)
Caulobacter vibrioides NA1000 (3)
Klebsiella pneumoniae subsp. pneumoniae (3)
Caenorhabditis elegans (3)
Glycine max (3)
Sus scrofa (3)
Pseudomonas aeruginosa (3)
Vitis vinifera (3)
Gallus gallus (3)
Caulobacter vibrioides (2)
Cryptococcus neoformans (2)
Ananas comosus (2)
Pseudomonas putida (2)
Aspergillus fumigatus (2)
Aspergillus niger (2)
Zea mays (2)
Oryza sativa (2)

Repository

biostudies-arrayexpress (1962)
ENA (1255)
geo (1060)
pride (142)
MassIVE (33)
EGA (26)
iProX (18)
MetaboLights (15)
jPOST (12)
BioModels (6)
PeptideAtlas (6)
GPMDB (4)
EVA (2)

Tissue

Cell culture (42)
Epithelial cell (8)
Permanent cell line cell (6)
T cell (5)
Brain (4)
Cell suspension culture (4)
Fibroblast (4)
Hepatocyte (4)
B cell (3)
Bone marrow (3)
Embryo (3)
Fetal cardiomyocyte (3)
Kidney (3)
Liver (3)
Plant cell (3)
Blood cell (2)
Breast (2)
Erythrocyte (2)
Flower (2)
Leaf (2)
Lung (2)
Myeloid cell (2)
Root (2)
Shoot (2)
GSC cell line (1)
HeLa cell (1)
MOLM-14 cell (1)
MOLM-16 cell (1)
MV-4-11 cell (1)
Schwann cell (1)

Disease

Breast cancer (4)
Not Available (4)
Normal (3)
Chronic myeloid leukemia (3)
Neuroblastoma (3)
Hepatocellular carcinoma (2)
Adenocarcinoma (2)
Colon cancer (2)
Wild type (1)
Acute lymphocytic leukemia (1)
Breast Carcinoma (1)
Lymphoma (1)
Burkitt's lymphoma (1)
Erythroleukemia (1)
Infected (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Rheumatoid arthritis (1)
Osteosarcoma (1)
Colon carcinoma (1)
None- acute control (1)
Leukemia (1)
Adenoid cystic carcinoma (1)
Benign adenoma (1)
Cancer (1)
None- Acute Control (1)
N/a (1)
Osteosarcoma (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)

Technology Type

Mass Spectrometry (142)
Shotgun proteomics (61)
Bottom-up proteomics (39)
Affinity purification coupled with mass spectrometry proteomics (35)
Data-dependent acquisition (19)
Data-independent acquisition (15)
Mass spectrometry (11)
Gel-based experiment (5)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
HDMSE (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
All-ion fragmentation (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (25)
Illumina HiSeq 2000 (16)
NextSeq 500 (14)
Illumina HiSeq 4000 (12)
Illumina HiSeq 2500 (8)
Illumina Genome Analyzer II (6)
NextSeq 550 (6)
NextSeq 2000 (5)
Illumina Genome Analyzer IIx (4)
Axon- GenePix4000B (3)
Illumina HiSeq 1500 (3)
AB SOLiD 4 System (2)
Scanning hardware (2)
Illumina NovaSeq X (2)
Ion Torrent PGM (2)
Illumina HiSeq 1000 (2)
Illumina MiSeq (2)
Novogene in-house automated library preparation system (1)
Novogene automated library prep system (1)
Qiagen RNA extraction kit (1)
BD FACS ARIA III analyser (1)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
10x Genomics Chromium (1)
Axon GenePix4000B (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Solexa 2G Genome Analyzer (1)
Illumina iScan (1)
ScanArray scanning hardware (1)
BD FACSAria III cell sorter (1)

Publication Date

2013 (294)
2010 (278)
2012 (258)
2015 (254)
2026 (241)
2014 (224)
2011 (220)
2025 (198)
2016 (170)
2024 (128)
2008 (127)
2022 (121)
2023 (120)
2020 (93)
2021 (93)
2019 (80)
2018 (79)
2009 (76)
2017 (67)
2007 (60)
2005 (35)
2006 (26)
2003 (3)
2002 (2)
2004 (1)

UNIPROT ID/AC

P37173 (1)
Q15796 (1)
Q13485 (1)
P36897 (1)

CHEBI ID

CHEBI:17992 (3)
CHEBI:16335 (3)
CHEBI:16027 (3)
CHEBI:28824 (2)
CHEBI:68883 (2)
CHEBI:91152 (2)
CHEBI:68434 (2)
CHEBI:133172 (2)
CHEBI:83058 (2)
CHEBI:22470 (2)
CHEBI:28733 (2)
CHEBI:22990 (2)
CHEBI:77131 (2)
CHEBI:24266 (2)
CHEBI:28238 (2)
CHEBI:26984 (2)
CHEBI:33508 (2)
CHEBI:48430 (2)
CHEBI:27693 (2)
CHEBI:24298 (2)
CHEBI:37084 (2)
CHEBI:16750 (2)
CHEBI:17505 (2)
CHEBI:89363 (1)
CHEBI:18367 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)
CHEBI:17234 (1)

Metabolite Name

Ofloxacin (2)
L-Aspartic acid (2)
L-Proline (2)
9,10-DiHOME (2)
Succinic acid (2)
Fumaric acid (2)
Citric acid (2)
Glutaric acid (2)
Deoxyinosine (2)
Azelaic acid (2)
Galactinol (2)
Tryptophan (2)
Phenylaceticacid (1)
7-Carboxy-gamma-tocotrienol (1)
Tetracosanoicacid (1)
N-Glycolylneuraminicacid (1)
Mevalonicacid5-pyrophosphate (1)
Adrenicacid (1)
(all-E)-6-Apo-y-caroten-6-al (1)
LysoPG18:1;LysoPG18:1 (1)
4,8,12,15-Octadecatetraenoicacid (1)
1,2,5,6-Tetrahydro-4H-pyrrolo[3,2,1-ijquinolin-4-one (1)
Nicotinicacid (1)
LysoPG18:0;LysoPG18:0 (1)
3b-Hydroxy-5-cholenoicacid (1)
N-Acetylneuraminicacid (1)
LysoPC16:0 (1)
18-carboxydinorLeukotrieneB4 (1)
GibberellinA100 (1)
Acylcarnitine7:0 (1)

First Public Date

2026 (228)
2025 (156)
2024 (132)
2023 (111)
2014 (101)
2022 (94)
2020 (76)
2021 (72)
2019 (69)
2018 (61)
2017 (59)
2015 (37)
2016 (33)
2013 (26)

Modelling Approach

Ordinary differential equation model (5)
Metabolic network (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (10)
State Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signaling Network, School of Life Sciences, Xiamen University, Xiamen 361102, Fujian Province, P. R. China (3)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (2)
Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada. (2)
Institute of Biochemistry II, Goethe University Frankfurt, Medical School, 60590 Frankfurt, Germany (2)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
UMR1332, INRAE Nouvelle-Aquitaine Bordeaux, France. (2)
Wenzhou Medical University (2)
1)Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), 08916 Badalona, Spain 2)Cancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Research Institute (IJC), Campus ICO-GTP-UAB, 08916 Badalona, Spain (1)
1-Physiological Genomics, Biomedical Center (BMC), Ludwig-Maximilians Universitaet Muenchen, 82152 Planegg/Munich, Germany. 2- Institute for Stem Cell Research, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health, 85764 Neuherberg, Germany. (1)
2Oncode Institute and Department of Molecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, 3584 CX, Utrecht, The Netherlands. (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor, Chemistry and Biochemistry, University of Texas at Arlington (1)
Associate Professor, Department of Laboratory Medicine, UCSF (1)
Associate Professor, Department of Neurology, UNC-Chapel Hill (1)
Australian Institute for Bioengineering and Nanotechnolog (AIBN), The University of Queensland (1)
Babraham Institute (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands (1)
Brain Research Institute, University of Zurich (1)
C.S. Bond Life Science Center, Division of Plant Sciences and Technology, University of Missouri, Columbia, MO, United States (1)
CNRS, Inserm, Nantes Université, Univ Angers, CRIC2NA, Nantes, France (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Carnegie Institution at Stanford (1)
Carnegie Mass Spectometry facility Carnegie Science at Stanford (1)
Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia (1)
Chemistry Department, The Scripps Research Institute, La Jolla, California, USA (1)
Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India (1)
Cold Spring Harbor Laboratory (1)