Cofactor biosynthesis

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Organisms

Mus musculus (94)
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Organisms

Mus musculus (12)
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Saccharomyces cerevisiae (2)
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Escherichia coli str. K-12 substr. MG1655 (1)
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Repository

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Tissue

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Disease

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Technology Type

Mass Spectrometry (21)
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Instrument Platform

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Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
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Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

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2010 (44)
2015 (36)
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UNIPROT ID/AC

3MGA_BACSU (1)
3MGH_BACSU (1)
4OT_BACSU (1)
53DR_BACSU (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGL_BACSU (1)
AADK_BACSU (1)
AAPA_BACSU (1)
AAT1_BACSU (1)
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ABH_BACSU (1)
ABRB_BACSU (1)
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ACOR_BACSU (1)
ACPK_BACSU (1)
ACPS_BACSU (1)
ACP_BACSU (1)
ACSA_BACSU (1)

CHEBI ID

CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:24266 (3)
CHEBI:18095 (3)
CHEBI:6650 (3)
CHEBI:82969 (3)
CHEBI:17597 (3)
CHEBI:16704 (3)
CHEBI:17964 (3)
CHEBI:30915 (3)
CHEBI:81190 (2)
CHEBI:157877 (2)
CHEBI:87499 (2)
CHEBI:88427 (2)
CHEBI:143251 (2)
CHEBI:23747 (2)
CHEBI:138775 (2)
CHEBI:68434 (2)
CHEBI:41308 (2)
CHEBI:30831 (2)
CHEBI:86543 (2)
CHEBI:50621 (2)
CHEBI:34687 (2)
CHEBI:17521 (2)
CHEBI:46905 (2)
CHEBI:27389 (2)
CHEBI:17992 (2)
CHEBI:6032 (2)
CHEBI:15901 (2)
CHEBI:44510 (2)

Metabolite Name

Adenine (5)
Melibiose (4)
Acetylcarnitine (4)
L-Histidine (4)
Adenosine (4)
Nelfinavir (3)
Uracil (3)
Betaine (3)
Cinobufagin (3)
L-Lysine (3)
Perindopril (3)
Triethanolamine (3)
Acetylcholine (3)
Indole (3)
Choline (3)
Xanthosine (3)
Spermidine (3)
Guanine (3)
Cytosine (3)
Dodecanedioic acid (3)
3-Hydroxycapric acid (3)
Guanosine (3)
Traumatic Acid (3)
Thymidine (3)
Uridine (3)
Creatinine (3)
Creatine (3)
Inosine (3)
Hypoxanthine (3)
Parecoxib (2)

First Public Date

2013 (21)
2026 (15)
2024 (11)
2025 (7)
2014 (6)
2020 (5)
2023 (4)
2019 (3)
2015 (3)
2021 (2)
2018 (2)
2022 (1)
2017 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Dalhousie University (2)
Boston College, Department of Chemistry (1)
Centre for Functional Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, D-85748 Garching, Germany. (1)
Chair for Biochemistry University Rostock formerly Chair for Biochemistry of Plants, Ruhr-University Bochum (1)
Chair of Organic Chemistry II TU München Ernst-Otto-Fischer-Straße 8 D-85748 Garching Germany (1)
Chair of Organic Chemistry II, Technical University of Munich (1)
Department of Chemistry, Chair of Organic Chemistry II, Center For Functional Protein Assemblies (CPA), Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany (1)
Department of Microbiology, Immunology and Pathology; Colorado State University; Fort Collins, CO, USA (1)
Fungal Biodiversity and Biotechnology Laboratory team "Responses and adaptation of fungi to environmental constraints" 163 Avenue de Luminy, CP925 13288 Marseille, Cedex 9, FRANCE (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Toxicology Permoserstraße 15, 04318 Leipzig, Germany (1)
Infection and Immunity Program, Monash Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria, 3800 Australia (1)
Institut fuer Mikrobiologie EMAU Greifswald (1)
Institute of Biochemistry and Biology, Department of Molecular Enzymology, University of Potsdam, Potsdam, Germany (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg,France (1)
London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON Canada (1)
Max Planck Unit for the Science of Pathogens, Berlin, Germany (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
University of Washington (1)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (1)
de Duve Institute UCLouvain and WELBIO (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (8)
fungi (1)

Study type

Transcription profiling by array (168)
RNA-seq of coding RNA (47)
ChIP-seq (13)
Unknown experiment type (7)
ChIP-chip by tiling array (5)
Other (4)
RNA-seq of non coding RNA (4)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (102)
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2010 (78)
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2016 (62)
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2019 (55)
2012 (54)
2009 (52)
2008 (43)
2007 (26)
2006 (23)
2026 (15)
2005 (10)
2004 (10)
2003 (4)
2001 (4)
2000 (4)
2002 (3)
1998 (3)
1999 (2)

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Porcine epidemic diarrhea virus manipulates IMPDH-dependent nucleotide biosynthesis to facilitate replication

Porcine epidemic diarrhea virus (PEDV) causes acute intestinal disease in pigs and remains a major threat to the global swine industry due to its high morbidity and mortality in neonatal piglets. To investigate host metabolic alterations upon PEDV infection, we performed untargeted metabolomic pr...

2025-10-17 | MTBLS13153 | MetaboLights

GATA-1 and heme regulate the erythroid cell transcriptome.

Alas2 gene encodes the rate-limiting enzyme in heme biosynthesis. CRISPR/Cas9-mediated ablation of two Alas2 intronic cis-elements strongly reduced GATA-1-induced Alas2 transcription, heme biosynthesis, and GATA-1 regulation of other vital constituents of the erythroid cell transcriptome. Bypassing ...

ORGANISM(S): Mus musculus

2016-01-07 | E-GEOD-74371 | biostudies-arrayexpress

In Vitro Biosynthesis of the [Fe]-Hydrogenase Cofactor Verifies the Proposed Biosynthetic Precursors.

Not available

S-EPMC9314073 | biostudies-literature

Cell-Free Total Biosynthesis of Plant Terpene Natural Products using an Orthogonal Cofactor Regeneration System.

Not available

S-EPMC8963176 | biostudies-literature

Radical Breakthroughs in Natural Product and Cofactor Biosynthesis.

Not available

S-EPMC5790616 | biostudies-literature

The role of FeS clusters for molybdenum cofactor biosynthesis and molybdoenzymes in bacteria.