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MetabolomicsComprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS
Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...
2021-11-19 | MTBLS1972 | MetaboLights
MetabolomicsHabitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-04-07 | MTBLS13494 | MetaboLights
MetabolomicsHabitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights
TranscriptomicsExpression data from livers of C57BL/6J mice fed a high-fat diet and coffee
The present study was conducted to evaluate the effects of the intake of three types of coffee (caffeinated, decaffeinated, and green unroasted coffee) on the livers of C57BL/6J mice fed a high-fat diet, and to extensively elucidate the physiological responses to coffee intake by analysing the f...
ORGANISM(S): Mus musculus 
2013-12-10 | E-GEOD-53131 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profiles of HT29 cells treated with Instant Caffeinated Coffee or Caffeic Acid versus control.
A summary of the work associated to these microarrays is the following: Background: Phenolic compounds present in coffee are antioxidants in vitro that might protect against cardiovascular disease and certain types of cancer in humans. Objective: Our aim was to identify differentially expressed gen...
ORGANISM(S): Homo sapiens 
2013-05-29 | E-GEOD-35382 | biostudies-arrayexpress
GenomicsCoffee mucilage
Coffee mucilage Raw sequence reads
PRJNA977712 | ENA
GenomicsCoffee mucilage
Coffee mucilage Raw sequence reads
PRJNA977378 | ENA
TranscriptomicsCoffee leaf miner infestation in coffee plants
Coffee leaf miner is an important plague in coffee crops. Using subtracted cDNA libraries and nylon filter arrays, we analyzed the expression profile of 1536 expressed sequence tags (ESTs) of coffee plants from an hybrid progeny (C. arabica x C. racemosa), containg resistant (R) and susceptible plan...
ORGANISM(S): Coffea 
2010-06-09 | E-GEOD-2045 | biostudies-arrayexpress
GenomicsCoffee Fermentation
Microbial diversity in Coffee Fermentation by wet process
PRJNA940080 | ENA
GenomicsCoffee mucilage
Microbial diversity from Coffee mucilage (Raw sequence reads)
PRJNA940996 | ENA
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