Cohen A A - OmicsDI

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Unknown (14910)
Transcriptomics (284)
Proteomics (137)
Genomics (100)
Metabolomics (13)
Genomic (4)
Models (2)
Clinical (1)

Organisms

Homo sapiens (190)
Mus musculus (93)
Streptomyces coelicolor (28)
Escherichia coli (23)
Rattus norvegicus (19)
Caenorhabditis elegans (14)
Vibrio cholerae (9)
Drosophila melanogaster (7)
Populus x canadensis (5)
Arabidopsis thaliana (5)
Danio rerio (4)
Equus caballus (3)
Glycine max (3)
Plasmodium falciparum (3)
Paramecium tetraurelia (3)
Dehalococcoides (2)
Streptococcus agalactiae (2)
Schizosaccharomyces pombe (2)
Rattus rattus (2)
Dehalococcoides mccartyi 195 (1)
Helicoverpa zea (1)
Dehalococcoides sp. ANAS2 (1)
Citrus x paradisi (1)
environmental samples (1)
Dehalobacter restrictus (1)
Neospora caninum (1)
Macaca mulatta (1)
Tetranychus urticae (1)
Toxoplasma gondii (1)
Apis mellifera (1)

Organisms

Mus musculus (8)
Homo sapiens (5)
Acridotheres tristis (4)
Marmota flaviventris (3)
Callospermophilus lateralis (3)
Ictidomys tridecemlineatus (3)
Hydrolagus colliei (3)
Dehalococcoides (1)
Paramecium tetraurelia (1)
synthetic construct (1)
Rattus norvegicus (1)
Plasmodium falciparum (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (303)
pride (129)
ENA (51)
EGA (26)
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dbGaP (4)
geo (4)
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iProX (1)

Tissue

Cell culture (26)
Brain (9)
Whole body (8)
Liver (7)
Blood (5)
Blood plasma (5)
Epithelial cell (4)
Heart (4)
Lung (4)
Macrophage (4)
Permanent cell line cell (4)
Spleen (3)
Blood cell (2)
Blood serum (2)
Breast (2)
Brown adipose tissue (2)
Cell suspension culture (2)
Colon (2)
Erythrocyte (2)
Fibroblast (2)
Kidney (2)
Skin (2)
T cell (2)
Astrocyte (1)
B cell (1)
Bile (1)
Breast cancer cell line (1)
HeLa cell (1)
MiaPaCa-2 cell (1)
SW-620 cell (1)

Disease

Alzheimer's disease (2)
COVID-19 (2)
Cardiovascular system disease (2)
Colon cancer (2)
Huntington Disease (2)
Wilms' tumor (1)
Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
Primary tumor (1)
Short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome (1)
Normal (1)
Colorectal Neoplasms (1)
Acute leukemia (1)
Breast cancer (1)
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Congenital disorder of glycosylation (1)
Crohn's disease (1)
Disease free (1)
Glioblastoma (1)
Head and neck squamous cell carcinoma (1)
Hermansky-Pudlak syndrome (1)
Infertility (1)
Inflammatory bowel disease (1)
Kidney disease (1)
Leishmaniasis (1)
Lissencephaly 1 (1)
Lung non-squamous non-small cell carcinoma (1)
Lung squamous cell carcinoma (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Myocardial ischemia (1)

Technology Type

Mass Spectrometry (129)
Shotgun proteomics (66)
Bottom-up proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (16)
Gel-based experiment (12)
Mass spectrometry (11)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
SWATH MS (3)
NMR spectroscopy (2)
Top-down proteomics (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
HDMSE (1)
Metaproteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Q Exactive (5)
Q Exactive Plus (3)
Illumina HiSeq 2000 (2)
Orbitrap Fusion (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (47)
2012 (45)
2014 (38)
2013 (31)
2005 (31)
2022 (27)
2023 (25)
2011 (23)
2026 (21)
2021 (21)
2015 (21)
2024 (19)
2025 (18)
2018 (16)
2006 (15)
2016 (13)
2007 (11)
2008 (10)
2020 (9)
2009 (9)
2019 (5)
2017 (1)
2003 (1)

CHEBI ID

CHEBI:16199 (9)
CHEBI:30769 (9)
CHEBI:15428 (8)
CHEBI:17754 (8)
CHEBI:16335 (7)
CHEBI:16704 (7)
CHEBI:16737 (7)
CHEBI:17268 (7)
CHEBI:17568 (7)
CHEBI:17822 (7)
CHEBI:18211 (7)
CHEBI:18257 (7)
CHEBI:25017 (7)
CHEBI:28044 (7)
CHEBI:32816 (7)
CHEBI:6650 (7)
CHEBI:15354 (6)
CHEBI:15356 (6)
CHEBI:15724 (6)
CHEBI:15753 (6)
CHEBI:15891 (6)
CHEBI:16359 (6)
CHEBI:16449 (6)
CHEBI:16755 (6)
CHEBI:16919 (6)
CHEBI:17033 (6)
CHEBI:17154 (6)
CHEBI:17234 (6)
CHEBI:17596 (6)
CHEBI:17768 (6)

Metabolite Name

Glycerol (6)
Glycine (6)
Alanine (5)
Asparagine (5)
Aspartate (5)
Citrate (5)
Citrulline (5)
Creatinine (5)
Cysteine (5)
Fructose (5)
Gluconate (5)
Glutamine (5)
Isoleucine (5)
Lactate (5)
Leucine (5)
Lysine (5)
Malate (5)
Methionine (5)
N1-Methyl-2-pyridone-5-carboxamide (5)
Ornithine (5)
Phenylalanine (5)
Phosphate (5)
Proline (5)
Serine (5)
Threonine (5)
Trimethylamine N-oxide (5)
Tryptophan (5)
Tyrosine (5)
Uracil (5)
Urea (5)

First Public Date

2025 (15)
2014 (8)
2024 (7)
2023 (4)
2021 (4)
2026 (3)
2022 (2)
2019 (2)
2016 (2)
2013 (2)
2017 (1)
2015 (1)

Modelling Approach

Logical model (1)

Study status

Completed (1)

Lab affiliation

Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (3)
Sheba Medical Center (3)
Technion Faculty of Medicine and Network Biology Research Laboratories, (3)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
Associate Professor, Department of Neurology, UNC-Chapel Hill (2)
Biochemistry and Molecular Biology, The Institute for Medical Research Israel-Canada (IMRIC). School of Medicine. The Hebrew University of Jerusalem, Israel. (2)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel (2)
Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (2)
Departments of Biochemistry and Neurology Emory University School of Medicine (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry Department (2)
1) Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA 2) Department of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA 3) Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, Illinois 60611, USA (1)
1Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Israel. (1)
Albert Resnick, M.D. Associate Professor Head, Weslie R. and William H. Janeway Laboratory of Molecular Metabolism The Rockefeller University (1)
Allergy and Clinical Immunology Unit, Meir Medical Center, Kfar Saba, Israel Faculty of Medical & Health Sciences, Tel Aviv University, Tel Aviv, Israel (1)
Baker Heart & Diabetes Institute (1)
Bar-Ilan University (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Ben-Gurion University of the Negev, Department of Life Science, Israel (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biology Faculty Technion - Israel Institute of Technology Haifa, Israel (1)
Biology Faculty Technion - Israel Institute of Technology, Haifa, Israel (1)
Calico Life Sciences, CA, USA (1)
Cancer Research Unit, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead NSW Australia (1)
Cell Signalling & Immunology, School of Life Sciences, Univeristy of Dundee (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Cornell University (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Department of Applied Human Sciences, Faculty of Science, and Faculty of Nursing Health Sciences Building, University of Prince Edward Island, Charlottetown, PE, Canada (1)
Department of Bimolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel (1)

Keyword

Bevacizumab (1)
Circulating tumor cells (1)
Treatment efficiency (1)

IsPrivate

False (1)

Classification

protozoa (1)

Modification

Not available (2)

Study type

Transcription profiling by array (188)
Unknown experiment type (31)
RNA-seq of coding RNA (24)
ChIP-seq (20)
Comparative genomic hybridization by array (11)
RNA-seq of non coding RNA (9)
Transcription profiling by tiling array (3)
MicroRNA profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
Methylation profiling by array (2)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Genotyping by high throughput sequencing (1)
Interventional (1)

Release Date

2022 (1705)
2021 (1581)
2023 (1429)
2025 (1413)
2024 (1291)
2020 (1172)
2019 (947)
2018 (874)
2017 (732)
2016 (710)
2015 (645)
2014 (505)
2012 (356)
2013 (333)
2011 (298)
2010 (251)
2026 (224)
2009 (196)
2008 (134)
2007 (98)
2006 (87)
2005 (73)
2004 (36)
2002 (29)
2003 (27)
2001 (20)
2000 (15)
1998 (15)
1999 (10)
1997 (5)

Location

France (1)

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Brown and beige adipose tissue regulate systemic metabolism through a metabolite interorgan signaling axis

Brown and beige adipose tissue are emerging as distinct endocrine organs. These tissues are functionally associated with skeletal muscle, adipose tissue metabolism and systemic energy expenditure, suggesting an interorgan signaling network. Using metabolomics, we identify 3-methyl-2-oxovaleric acid,...

2022-03-03 | MTBLS2436 | MetaboLights

1H NMR Urinary Metabolomic Analysis in Older Adults after Hip Fracture Surgery May Provide Valuable Information for Patient Profiling-A Preliminary Investigation

In these times of precision and personalized medicine, profiling patients to identify their needs is crucial to providing the best and most cost-effective treatment. In this study, we used urine metabolomics to explore the characterization of older adults with hip fractures and to explore the foreca...

2022-10-31 | MTBLS2903 | MetaboLights

Systematic analysis of a human renal transcript dataset

Glomerular diseases account for the majority of cases with chronic renal failure. Several genes have been identified with key relevance for glomerular function. Quite a few of these genes show a specific or preferential mRNA expression in the renal glomerulus. To identify additional candidate genes ...

ORGANISM(S): Homo sapiens

2010-07-19 | E-GEOD-21785 | biostudies-arrayexpress

A Novel Variant in VPS13B Underlying Cohen Syndrome.

Not available

S-EPMC10115529 | biostudies-literature

Cross-Platform Evaluation of Commercially Targeted and Untargeted Metabolomics Approaches to Optimize the Investigation of Psychiatric Disease.

Not available

S-EPMC8466258 | biostudies-literature

Delineation of Cohen syndrome following a large-scale genotype-phenotype screen.

Not available

S-EPMC1181995 | biostudies-literature

Disease relevance of rare VPS13B missense variants for neurodevelopmental Cohen syndrome.