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Unknown (4322)
Transcriptomics (147)
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Homo sapiens (100)
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Streptomyces coelicolor (20)
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environmental samples (1)
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Repository

biostudies-arrayexpress (159)
pride (78)
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Disease

COVID-19 (2)
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Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
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Technology Type

Mass Spectrometry (78)
Shotgun proteomics (39)
Bottom-up proteomics (19)
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Data-dependent acquisition (12)
Mass spectrometry (10)
Data-independent acquisition (3)
Gel-based experiment (3)
SWATH MS (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Metaproteomics (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (3)
Q Exactive Plus (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
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Publication Date

2012 (28)
2010 (26)
2014 (24)
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2008 (8)
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2007 (3)
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2017 (1)

CHEBI ID

CHEBI:16199 (7)
CHEBI:17754 (7)
CHEBI:30769 (7)
CHEBI:15428 (6)
CHEBI:16335 (6)
CHEBI:16704 (6)
CHEBI:17268 (6)
CHEBI:17568 (6)
CHEBI:17822 (6)
CHEBI:18211 (6)
CHEBI:18257 (6)
CHEBI:25017 (6)
CHEBI:28044 (6)
CHEBI:30915 (6)
CHEBI:32816 (6)
CHEBI:6650 (6)
CHEBI:15318 (5)
CHEBI:15354 (5)
CHEBI:15356 (5)
CHEBI:15753 (5)
CHEBI:15887 (5)
CHEBI:15891 (5)
CHEBI:15978 (5)
CHEBI:16027 (5)
CHEBI:16235 (5)
CHEBI:16359 (5)
CHEBI:16411 (5)
CHEBI:16449 (5)
CHEBI:16737 (5)
CHEBI:16755 (5)

Metabolite Name

Glycerol (5)
3-amino-2-piperidone (4)
Alanine (4)
Asparagine (4)
Aspartate (4)
Citrate (4)
Citrulline (4)
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N1-Methyl-2-pyridone-5-carboxamide (4)
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Phenylalanine (4)
Phosphate (4)
Proline (4)
Serine (4)
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Tryptophan (4)
Tyrosine (4)
Uracil (4)
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First Public Date

2021 (2)
2014 (2)
2017 (1)
2013 (1)

Classification

protozoa (1)

Study type

Transcription profiling by array (104)
Unknown experiment type (15)
RNA-seq of coding RNA (13)
ChIP-seq (11)
RNA-seq of non coding RNA (6)
Comparative genomic hybridization by array (4)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
Methylation profiling by array (1)

Release Date

2022 (532)
2021 (467)
2023 (449)
2025 (411)
2024 (387)
2020 (363)
2019 (276)
2018 (236)
2017 (212)
2016 (201)
2015 (190)
2014 (138)
2012 (102)
2011 (92)
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2010 (73)
2009 (68)
2026 (67)
2008 (44)
2006 (25)
2007 (19)
2005 (15)
2004 (9)
2002 (6)
2003 (5)
2000 (2)
2001 (1)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Sheba Medical Center (3)
Associate Professor, Department of Neurology, UNC-Chapel Hill (2)
Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (2)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
1Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Israel. (1)
Allergy and Clinical Immunology Unit, Meir Medical Center, Kfar Saba, Israel Faculty of Medical & Health Sciences, Tel Aviv University, Tel Aviv, Israel (1)
Baker Heart & Diabetes Institute (1)
Bar-Ilan University (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Ben-Gurion University of the Negev, Department of Life Science, Israel (1)
Cell Signalling & Immunology, School of Life Sciences, Univeristy of Dundee (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Cornell University (1)
Departement for Biomedical Research University of Bern Switzerland (1)
Department of Bimolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biology Technion, Haifa 32000, Israel (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Cell Biology and Physiology, University of Kansas Medical Center, USA (1)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, United States. (1)
Department of Chemical Physiology and Biochemistry Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv university, Tel Aviv, Israel (1)
Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, LE1 9HN (1)
Department of Medicine, Weill Cornell Medicine, New York, NY, USA (1)
Department of Molecular Cell Biology The Weizmann Institute of Science Rehovot, Israel (1)
Department of Molecular Genetics Faculty of Biochemistry Weizmann Institute of Science Rehovot, Israel (1)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel (1)
Department of Neurology, University of North Carolina, Chapel Hill, NC, USA (1)

Tags

xref:EuropePMC:PMC8617514 (2)
xref:PubMed:19073607 (1)
xref:PubMed:29109260 (1)
xref:PubMed:22561152 (1)
xref:PubMed:16682451 (1)
pathogen:protozoan (1)
pathogen (1)

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S. coelicolor Wild Type R5- Medium Time-course Study

Many biological processes are intrinsically dynamic, incurring profound changes at both molecular and physiological levels. Systems analyses of such processes incorporating large-scale transcriptome or proteome profiling can be quite revealing. Although consistency between mRNA and proteins is often...

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-7172 | biostudies-arrayexpress

S. coelicolor Wild Type Time-course Study in R5- medium (Culture#1)

Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this stud...

ORGANISM(S): Streptomyces coelicolor

2010-06-10 | E-GEOD-8084 | biostudies-arrayexpress

S. coelicolor M145 Time-course Study in R5- medium (Culture# 3)

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-8107 | biostudies-arrayexpress

S. coelicolor Wild Type Time-course Study in R5- medium (Culture#2)

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-8086 | biostudies-arrayexpress

S. coelicolor YSK3654 R5- medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21807 | biostudies-arrayexpress

S. coelicolor WL6268 R5- medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21808 | biostudies-arrayexpress

S. coelicolor YSK4425 Time-course Study in R5- medium (Culture#2)

ORGANISM(S): Streptomyces coelicolor

2010-06-10 | E-GEOD-8160 | biostudies-arrayexpress

Gene expression profiling after vaccination with the RTS,S candidate malaria vaccine in a controlled human malaria infection study

RTS,S is the sole candidate vaccine shown to provide protection against infection to malaria-naive adults challenged with mosquito-borne homologous falciparum malaria and protection against infection and clinical and severe disease to volunteers in malaria-endemic Africa who were exposed to diverse ...

ORGANISM(S): Homo sapiens

2017-04-27 | E-MTAB-4629 | biostudies-arrayexpress

Brown and beige adipose tissue regulate systemic metabolism through a metabolite interorgan signaling axis

Brown and beige adipose tissue are emerging as distinct endocrine organs. These tissues are functionally associated with skeletal muscle, adipose tissue metabolism and systemic energy expenditure, suggesting an interorgan signaling network. Using metabolomics, we identify 3-methyl-2-oxovaleric acid,...

2022-03-03 | MTBLS2436 | MetaboLights

S. coelicolor LY2517 R5- medium time course study

This SuperSeries is composed of the following subset Series: GSE21809: S. coelicolor LY2517 R5- medium time course study (Culture # 1) GSE21810: S. coelicolor LY2517 R5- medium time course study (Culture # 2) Refer to individual Series

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21811 | biostudies-arrayexpress

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4597 Results

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