Coleman M M - OmicsDI

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Unknown (2084)
Transcriptomics (70)
Proteomics (38)
Models (17)
Genomics (9)
Metabolomics (8)
Genomic (1)

Organisms

Homo sapiens (82)
Mus musculus (19)
Equus caballus (4)
Candida albicans (4)
Arabidopsis thaliana (3)
Haemophilus influenzae (2)
Saccharomyces cerevisiae (2)
marine metagenome (1)
Salmonella enterica (1)
Candida dubliniensis (1)
Plasmodium falciparum 3D7 (1)
Streptococcus pneumoniae (1)
Pseudomonas aeruginosa (1)
Thiobacillus denitrificans ATCC 25259 (1)
Borreliella burgdorferi B31 (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Ensifer meliloti (1)
Methylomonas denitrificans (1)
Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)
Trichoderma parepimyces (1)
Trichoderma reesei QM6a (1)
Trichoderma virens Gv29-8 (1)

Organisms

Homo sapiens (3)
Thiobacillus denitrificans ATCC 25259 (1)

Repository

biostudies-arrayexpress (71)
pride (34)
BioModels (17)
ENA (5)
GNPS (4)
MassIVE (4)
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EGA (2)
dbGaP (1)
geo (1)

Tissue

Cell line cell (7)
Brain (3)
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T-47D cell (3)
UWB1.289 cell (3)
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T cell (1)
Testis (1)
UWB1.289+BRCA1 cell (1)

Disease

Lymphoma (2)
Integrated HPV16 only (1)
Breast cancer (1)
Cell type cancer (1)
Colitis (1)
Colon cancer (1)
Esophageal cancer (1)
Lyme disease (1)
Malignant neoplasm of ovary (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (27)
Bottom-up proteomics (6)
Mass spectrometry (3)
SRM/MRM (2)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Agilent 5975C Series GC/MSD (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyser II (1)
ITQ 1100 (1)
TSQ Quantis (1)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
Q Exactive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2005 (17)
2010 (13)
2025 (13)
2011 (12)
2014 (11)
2012 (9)
2024 (8)
2013 (8)
2023 (7)
2007 (5)
2026 (5)
2015 (4)
2020 (4)
2016 (3)
2008 (3)
2018 (3)
2006 (2)
2017 (2)
2022 (2)
2004 (1)
2021 (1)
2019 (1)

Metabolite Name

(1,2,3-trimethyl-2-cyclopropen-1-yl)benzene (1)
(1-methylbutyl)cyclopentane (1)
(1R,4S)-4,7,7-trimethylbicyclo[4.1.0]hept-2-ene (1)
(2E)-1,4-dimethoxybut-2-en-1-yl acetate (1)
(E)-hept-4-en-2-one (1)
(E)-hex-2-enoate (1)
(E,E)-2,4-octadien-1-ol, acetate (1)
(E,Z)-farnesol (1)
(RS)-3-methyl-4-{[(Z)-prop-1-enyl]oxy}butanal (1)
(S)-(+)-2-heptanol (1)
(Z,E)-alpha-farnesene (1)
(trans)-3,4-oxa-2,5-dimethylhexane (1)
1, 1, 5-trimethyl-1, 2-dihydronaphthalene (1)
1,1,6-trimethyltetralin (1)
1,2-dichlorobenzene (1)
1,2-dimethyl 1,2,4-benzenetricarboxylate (1)
1,2-diphenylpropane (1)
1,2-propanediol (1)
1,3-diacetoxypropane (1)
1,3-oxathiane (1)
1,4-diacetoxybutane (1)
1,4-dioxane (1)
1-(1-ethoxyethoxy)-butane (1)
1-(1-ethoxyethoxy)pentane (1)
1-(1-methylethoxy)-2-propanone (1)
1-(2-phenethyl)imidazolidine-2,4,5-trione (1)
1-bromo-4-cyclopropylbenzene (1)
1-butanol (1)
1-decene (1)
1-decyne (1)

IsPrivate

False (17)

First Public Date

2014 (4)
2013 (1)

Modelling Approach

Ordinary differential equation model (17)

Modification

3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (47)
Comparative genomic hybridization by array (13)
RNA-seq of coding RNA (4)
Methylation profiling by array (3)
Unknown experiment type (1)
Other (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (232)
2023 (205)
2021 (205)
2022 (192)
2024 (184)
2020 (148)
2019 (140)
2018 (127)
2016 (104)
2017 (97)
2015 (91)
2014 (84)
2013 (73)
2012 (73)
2011 (54)
2026 (33)
2010 (28)
2009 (28)
2008 (19)
2007 (10)
2006 (8)
2005 (6)
2003 (6)
2004 (5)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Cellzome (7)
Applied Bioinformatics of Cancer University of Edinburgh Cancer Research Centre Institute of Genetics and Molecular Medicine Edinburgh, United Kingdom (1)
Assistant Professor, Pharmacology Dept, UNC-Chapel Hill (1)
Associate Member, Developmental Neurobiology St. Jude Children's Research hosptial (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Centre for medicines discovery, University of Oxford (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Charles Perkins Centre, School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia. (1)
Department of Biochemistry and Molecular Genetics, University of Colorado (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Obstetrics and Gynecology, Inova Fairfax Medical Campus, Inova Health System (1)
Department of Pharmacology University of North Carolina (1)
Department of Surgery, University of Florida, Gainesville, FL, USA; Sepsis and Critical Illness Research Center, Department of Surgery, University of Florida, Gainesville, FL, USA (1)
Institute of Genetics and Cancer (IGC), University of Edinburgh, Edinburgh, Scotland (1)
Jiangsu Academy of Agricultural Sciences (1)
Mass Spectrometry Facility Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Max Planck Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, 50931 Cologne, Germany Cologne Excellence Cluster on Stress Responses in ageing-associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 15Cologne, Germany (1)
National Institute for Cellular Biotechnology, Dublin City University (1)
Professor, Biochemistry and Molecular Biology, University of British Columbia, UBC (1)
Rutgers University, NJ, USA (1)
Section of Research Resources H093 The Pennsylvania State University College of Medicine 500 University Drive Hershey, PA 17033-0850 USA (1)
Stony Brook University (1)
Translational Genomics Research Institute (1)
University of Calgary, Department of Geoscience (1)
University of Greifswald Institute of Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str.8 17489 Greifswald (1)
University of North Carolina, Department of Biochemistry and Biophysics (1)
Vanderbilt University Proteomics Core (1)

Tags

xref:PubMed:17516585 (3)
xref:PubMed:17804732 (1)
xref:PubMed:23765377 (1)
xref:PubMed:16980503 (1)
xref:PubMed:21952923 (1)

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Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome [camb1Mb data]

For many oncogenes, increased expression resulting from copy number gain confers a selective advantage to cells that consequently make up the tumour bulk. To identify oncogenes of potential biological significance in cervical squamous cell carcinoma (SCC), 36 primary samples and ten cell lines were ...

ORGANISM(S): Homo sapiens

2011-02-16 | E-GEOD-27332 | biostudies-arrayexpress

Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome [penn1Mb data]

ORGANISM(S): Homo sapiens

2011-02-16 | E-GEOD-27331 | biostudies-arrayexpress

Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome

This SuperSeries is composed of the following subset Series: GSE27331: Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome [penn1Mb data] GSE27332: Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with a...

ORGANISM(S): Homo sapiens

2011-02-16 | E-GEOD-27333 | biostudies-arrayexpress

Comparison of Normal Prostate Fibroblasts Overexpressing Cyclin D1 and Carcinoma Associated Fibroblasts

The cyclin D1 oncogene encodes the regulatory subunit of a holoenzyme that phosphorylates and inactivates the Rb protein and promotes progression through G1 to S phase of the cell cycle. Several prostate cancer cell lines and a subset of primary prostate cancer samples have increased cyclin D1 prote...

ORGANISM(S): Homo sapiens

2007-08-31 | E-GEOD-6936 | biostudies-arrayexpress

Gene-expression analysis of Oncostatin-M (OSM) signalling in cervical squamous cell carcinomas over-expressing the Oncostatin-M receptor (OSMR)

The type II Oncostatin M receptor (OSMR) serves as the main binding site for the pleiotropic cytokine OSM. We have previously demonstrated a positive correlation between copy number driven OSMR over-expression and adverse clinical outcome in cervical tumours and have also established enhanced angiog...

ORGANISM(S): Homo sapiens

2011-09-29 | E-GEOD-27480 | biostudies-arrayexpress

An amber-encoding helper phage for more efficient phage display of noncanonical amino acids.

Not available

S-EPMC10359598 | biostudies-literature

Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing

Horse-specific genes are not readily identified from available equine EST/cDNA resources due to relatively limited coverage. In addition, equine gene sets predicted in silico by Ensembl and NCBI will not identify horse specific genes since they rely on homology-based projection of gene structure ann...

ORGANISM(S): Equus caballus

2013-07-30 | E-GEOD-46858 | biostudies-arrayexpress

Non-invasive evaluation of the equine gastrointestinal mucosal transcriptome.

Not available

S-EPMC7075554 | biostudies-literature

Epoxyalkane: coenzyme M transferase in the ethene and vinyl chloride biodegradation pathways of mycobacterium strain JS60.

Not available

S-EPMC193758 | biostudies-literature

Contribution of novel ATGL missense mutations to the clinical phenotype of NLSD-M: a strikingly low amount of lipase activity may preserve cardiac function.

Not available

S-EPMC3510752 | biostudies-literature