Colin A A - OmicsDI

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Unknown (880)
Transcriptomics (160)
Genomics (131)
Proteomics (55)
Metabolomics (10)
Genomic (5)
Models (3)
Other (2)
Multiomics (1)

Organisms

Homo sapiens (188)
Mus musculus (44)
Drosophila melanogaster (13)
Caenorhabditis elegans (10)
Saccharomyces cerevisiae (7)
Streptomyces coelicolor (4)
Cricetulus griseus (4)
Daphnia pulex (2)
Streptomyces coelicolor A3(2) (2)
Salmo salar (2)
Rattus norvegicus (2)
Equus caballus (2)
cellular organisms (1)
Drosophila mauritiana (1)
Rhodopseudomonas palustris CGA009 (1)
Human alphaherpesvirus 1 (1)
Ambystoma mexicanum (1)
Macaca mulatta (1)
Streptococcus pyogenes (1)
Xenopus tropicalis (1)
Daphnia magna (1)
Neisseria meningitidis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Saccharomyces cerevisiae S288C (1)
Staphylococcus aureus (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Solanum lycopersicum (1)
Ovis aries (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)

Organisms

Sodalis praecaptivus (1)
Bacillus subtilis (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (166)
EGA (105)
pride (25)
MassIVE (22)
ENA (20)
dbGaP (5)
GNPS (5)
MetaboLights (5)
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jPOST (3)
iProX (2)
GPMDB (1)

Tissue

Cell culture (6)
Brain (4)
Kidney (2)
Permanent cell line cell (2)
Blood (1)
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Bone marrow (1)
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Fibroblast (1)
Glioblast (1)
Mesenchymal cell (1)
Primary cell (1)
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Whole body (1)

Disease

Glioblastoma multiforme (3)
Alzheimer's disease (2)
Porphyria NOS (2)
Normal (2)
Cataract (1)
Parkinson's disease (1)
Small cell lung carcinoma (1)
Partially decidualised (1)
Breast cancer (1)
Not Available (1)
Alzheimer's disease 18 (1)
Brain glioblastoma multiforme (1)
Chronic kidney disease (1)
Disease free (1)
Osteoarthritis (1)

Technology Type

Mass Spectrometry (25)
Bottom-up proteomics (9)
Shotgun proteomics (9)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Illumina HiSeq 2000 (2)
Gel-based experiment (2)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)

Instrument Platform

Q Exactive (12)
Orbitrap Eclipse (4)
Illumina HiSeq 2500 (2)
In-house built IMS-MS with Agilent TOF MS (2)
Orbitrap Fusion Lumos (2)
Q Exactive Plus (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
Orbitrap Fusion (2)
TripleTOF 5600 (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Affymetrix GeneChip Scanner (1)
GenePix 4000A [Axon Instruments] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 micron particle size (1)
Instrument (1)
7000A Triple Quadrupole GC/MS (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion ETD (1)
5975C Series GC/MSD (Agilent) (1)
Flow injection analysis MS – alternating (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2013 (28)
2016 (21)
2014 (19)
2010 (19)
2015 (18)
2012 (17)
2024 (15)
2008 (15)
2011 (14)
2019 (10)
2023 (9)
2022 (9)
2007 (8)
2026 (6)
2018 (6)
2005 (4)
2025 (4)
2006 (3)
2021 (2)
2009 (2)
2017 (1)
2020 (1)

UNIPROT ID/AC

O14332 (1)
P0AEK1 (1)
P14737 (1)
P20437 (1)
P22216 (1)
P24868 (1)
P30283 (1)
P32641 (1)
P32797 (1)
P38111 (1)
P38147 (1)
P39009 (1)
P39875 (1)
P48581 (1)

CHEBI ID

CHEBI:17368 (3)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:15741 (2)
CHEBI:16027 (2)
CHEBI:16450 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16856 (2)
CHEBI:17553 (2)
CHEBI:28044 (2)
CHEBI:30769 (2)
CHEBI:32816 (2)
CHEBI:6650 (2)
CHEBI:09160 (1)
CHEBI:26523 (1)
CHEBI:9160 (1)
CHEBI:10642 (1)
CHEBI:1148 (1)
CHEBI:1230 (1)
CHEBI:131364 (1)
CHEBI:131440 (1)
CHEBI:132004 (1)
CHEBI:132007 (1)
CHEBI:132034 (1)
CHEBI:132035 (1)
CHEBI:132036 (1)
CHEBI:132579 (1)
CHEBI:132580 (1)
CHEBI:132581 (1)

Metabolite Name

Deoxyuridine (2)
1-O-octadecylglycerol (1)
1-hexadecanol (1)
1-monopalmitin (1)
11-eicosenoic acid (1)
2,3-butanediol (1)
2-Deoxyglucose phosphate (1)
2-aminobutyric acid (1)
2-hydroxy-3-methyl pentanoic acid (1)
2-hydroxy-4-methyl pentanoic acid (1)
2-hydroxyglutaric acid (1)
2-hydroxypyridine (1)
2-ketoisocaproic acid (1)
24-ethyl coprostanol (1)
3-(3-hydroxyphenyl)propionic acid (1)
3-(4-hydroxyphenyl)propionic acid (1)
3-aminoisobutyric acid (1)
3-hydroxybutyric acid (1)
3-hydroxyphenylacetic acid (1)
3-hydroxypyridine (1)
3-methyl-2-oxobutanoic acid (1)
4-guanidinobutyric acid (1)
4-hydroxy-3-methoxybenzoic acid (1)
4-hydroxybenzoic acid (1)
4-hydroxyphenylacetic acid (1)
5-6-Dihydrouridine (1)
5-aminovaleric acid (1)
5-hydroxyindole-3-acetic acid (1)
5-hydroxyvaleric acid (1)
6-deoxyglucose (1)

First Public Date

2026 (16)
2022 (1)
2021 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

National Institute for Bioprocessing Research and Training (3)
Institute for Transformative Molecular Medicine, Case Western Reserve University School of Medicine (2)
Biochemistry (1)
Cell Signaling and Immunology, School of Life Science, University of Dundee, Dundee. United Kingdom (1)
Department of Biomedical Sciences, University of North Dakota, Grand Forks, ND, USA (1)
Department of Genetics, Harvard Medical School Division of Genetics, Brigham and Women's Hospital Howard Hughes Medical Institute (1)
Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA Division of Genetics, Brigham & Women's Hospital, Boston, MA 02115, USA Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
ETH Zurich (1)
Functional Genetics Division, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK (1)
Kennedy Institute of Rheumatology, Nuffield Department of Orthopedics, Rheumatology and Musculoskeletal Sciences, The University of Oxford, Oxford, UK. (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Neuropathology and Neurodegeneration Laboratory (1)
Neuropathology and Neurodegenration Laboratoty, The Florey Institute (1)
PPN Proteomics Plateform SFR Necker US24/CNRS UAR3633, Université Paris Cité, Paris, France (1)
PRISM - U1192 Universite de Lille FRANCE (1)
School of Life and Environmental Sciences, Charles Perkins Centre, Larance Lab, University of Sydney, Australia. (1)
The University of Sydney, School of Life and Environmental Sciences, Charles Perkins Centre, Sydney, New South Wales, Australia. (1)
Umea University (1)
University of Missouri (1)
Université de Namur - URBC Narilis (1)
Washington University in St. Louis, School of Medicine, Department of Cell Biology and Physiology,Center for Investigation of Membrane Excitability Diseases (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

4 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (89)
RNA-seq of coding RNA (24)
RNA-seq of non coding RNA (10)
Comparative genomic hybridization by array (8)
Genotyping by array (7)
ChIP-seq (5)
Unknown experiment type (4)
Methylation profiling by array (4)
ChIP-chip by array (3)
Other (3)
MicroRNA profiling by array (2)
MicroRNA profiling by high-throughput sequencing (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (116)
2023 (116)
2021 (115)
2022 (95)
2024 (81)
2020 (77)
2019 (56)
2015 (50)
2016 (46)
2018 (42)
2017 (39)
2013 (37)
2014 (35)
2010 (28)
2012 (23)
2011 (22)
2026 (16)
2008 (16)
2007 (10)
2006 (7)
2005 (5)
2009 (4)
2004 (3)
2003 (2)
2001 (2)
2002 (1)

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A multi-omics approach to study peroxisome proliferator-activated receptor mediated regulation of lipid metabolism in Atlantic cod (Gadus morhua)

Lipid metabolism is essential in maintaining energy homeostasis in multicellular organisms. In vertebrates, a group of nuclear receptor transcription factors named peroxisome proliferator-activated receptors (PPARs, NR1C) regulate the expression of many genes involved in these processes. We have rec...

2022-02-28 | MTBLS2131 | MetaboLights

Revealing Oft-cited but Unpublished Papers of Colin Pittendrigh and Coworkers.

Not available

S-EPMC5697742 | biostudies-literature

Colin Francis Herridge

Not available

S-EPMC1125737 | biostudies-literature

Barriers to discharge: A retrospective study of factors associated with stays of longer than 2 years in a French secure hospital unit.

Not available

S-EPMC11617801 | biostudies-literature

Morrison_plantMAAST_sampleContribution_20221223

Colin Morrison's mxXML files of 32 plant species for plantMAAST collaboration. To be clear, mass spectrometry was done with a Thermo Fisher Scientific Q Exactive hybrid quadrupole-orbitrap at The University of Texas at Austin.

ORGANISM(S): Morrison's 32 Species For Plantmaast

2022-12-23 | MSV000090968 | MassIVE

Prevention of tau seeding and propagation by immunotherapy with a central tau epitope antibody.

Not available

S-EPMC6536853 | biostudies-literature

Dr David Colin-Thome

Not available

S-EPMC314501 | biostudies-literature

PD-1 Blockade in Mismatch Repair-Deficient, Locally Advanced Rectal Cancer.

Not available

S-EPMC9492301 | biostudies-literature

GNPS - Morrison_plantMAAST_sampleContribution_20221223

ORGANISM(S): Morrison's 32 Species For Plantmaast

2022-12-23 | MSV000090968 | GNPS

Transcription profiling of 5 mouse strains liver, kidney and testis to identify the contribution of normal variation and genetic background to mammalian gene expression

5 mouse strains, 3 mice per strain, and 4 microarrays per mouse for a total of 60 microarray experiments. Each sample is liver RNA hybridized against a reference RNA consisting of equal parts mouse liver, kidney, and testis RNA. Two of the 4 microarrays per mouse were done with the experimental sa...

ORGANISM(S): Mus musculus

2006-02-14 | E-MEXP-568 | biostudies-arrayexpress

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