Comparative proteomic analysis

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Unknown (1881)
Proteomics (1601)
Genomics (133)
Transcriptomics (132)
Metabolomics (12)
Other (11)
Multiomics (2)

Organisms

Homo sapiens (180)
Mus musculus (48)
Rattus norvegicus (13)
Danio rerio (10)
Arabidopsis thaliana (8)
Escherichia coli (7)
Saccharomyces cerevisiae (5)
Haloarcula hispanica (4)
Drosophila melanogaster (3)
Staphylococcus aureus (3)
Sus scrofa (3)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Daphnia magna (2)
Porphyromonas gingivalis (2)
Plasmodium falciparum (2)
Lactococcus lactis (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1)
Rhodopseudomonas palustris (1)
Orientia tsutsugamushi (1)
Rickettsia prowazekii (1)
Carassius auratus (1)
Deinococcus radiodurans (1)
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Treponema denticola (1)
Corynebacterium glutamicum (1)
Trypanosoma cruzi (1)
Plasmodium falciparum 3D7 (1)
Burkholderia cenocepacia (1)
Sander lucioperca (1)

Organisms

Homo sapiens (31)
Mus musculus (23)
Rattus norvegicus (3)
Candida albicans (2)
Danio rerio (2)
Sus scrofa (2)
Zea mays (2)
Thermovibrio ammonificans HB-1 (1)
Edaphosphingomonas haloaromaticamans (1)
Acetivibrio thermocellus (1)
Sander lucioperca (1)
Nicotiana benthamiana (1)
Plasmodium falciparum (1)
Physcomitrium patens (1)
Perna viridis (1)
Xenopus tropicalis (1)
Lactococcus lactis (1)
Oryctolagus cuniculus (1)
Aspergillus fumigatus (1)
Ipomoea batatas (1)
Medicago truncatula (1)
Vibrio parahaemolyticus (1)
Vitis vinifera (1)
Sus scrofa domesticus (1)
Solanum lycopersicum (1)
Saccharomyces cerevisiae (1)
Escherichia coli (1)

Repository

pride (1147)
iProX (237)
ENA (123)
biostudies-arrayexpress (95)
MassIVE (73)
PeptideAtlas (63)
geo (44)
PAXDB (44)
jPOST (32)
MetaboLights (10)
GPMDB (9)
EGA (5)
PanoramaPublic (4)
GNPS (2)
ExpressionAtlas (1)

Tissue

Cell culture (161)
Plant cell (75)
Leaf (64)
Brain (48)
Epithelial cell (44)
Root (39)
Blood serum (38)
Blood plasma (33)
Others (26)
Whole body (24)
Liver (23)
Fibroblast (22)
Cell suspension culture (18)
Blood cell (18)
Heart (17)
Kidney (16)
Embryo (14)
Lung (13)
Permanent cell line cell (13)
Sperm (12)
Male Reproductive System (8)
Female Reproductive System (7)
Digestive System (6)
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Liver (3)
Breast (2)
Lung (1)
Pancreas (1)
Adrenal Gland (1)
Kidney (1)

Disease

Disease free (29)
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Cardiovascular system disease (11)
Colon cancer (10)
Not Available (9)
Melanoma (9)
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Alzheimer's disease (7)
Prostate adenocarcinoma (6)
Malignant neoplasm of ovary (6)
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Obesity (5)
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Brain cancer (4)
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Urinary bladder cancer (4)
Asthma (3)
Stomach cancer (3)
Plasmodium falciparum malaria (3)
Epilepsy (3)
Pancreas adenocarcinoma (3)
Pancreatic ductal adenocarcinoma (3)
Pulmonary tuberculosis (3)
Breast Carcinoma (1)

Technology Type

Mass Spectrometry (1147)
Shotgun proteomics (660)
Bottom-up proteomics (227)
Data-dependent acquisition (115)
Gel-based experiment (82)
Data-independent acquisition (71)
SWATH MS (58)
Top-down proteomics (37)
HDMSE (33)
Affinity purification coupled with mass spectrometry proteomics (28)
SRM/MRM (15)
MSE (9)
Mass spectrometry (8)
All-ion fragmentation (6)
DiaPASEF (5)
Mass spectrometry imaging (4)
Proteogenomics (3)
Affinity proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
SomaScan affinity proteomics (1)
Olink affinity proteomics (1)
Immunopeptidomics (1)

Instrument Platform

LTQ Orbitrap Elite (33)
LTQ Orbitrap Velos (32)
Q Exactive (15)
Illumina HiSeq 4000 (9)
Instrument (9)
Orbitrap Fusion Lumos (8)
Q Exactive HF (7)
LTQ Orbitrap (6)
TripleTOF 5600 (3)
Q Exactive HF-X (3)
Orbitrap Fusion (3)
Q Exactive Plus (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Axon- GenePix4000B (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
Thermo Fischer-Orbitrap Fusion Tribrid (1)
TimsTOF Pro (Bruker Daltonics) (1)
MALDI-TOF MS Analyzer (Bruker, Germany) (1)
QSTAR Elite (1)
Eclipse Tribrid Orbitrap (Thermo Scientific) (1)
Thermo Scientific Dionex UltiMate 3000 RSLC system (1)
Waters Synapt G2 HDMS (1)
Bruker Impact II (1)
Q-Exactive HFX (1)
ACQUITY UPLC (1)

Publication Date

2025 (202)
2026 (202)
2021 (172)
2022 (166)
2020 (127)
2023 (126)
2019 (118)
2024 (115)
2018 (88)
2014 (88)
2017 (70)
2016 (57)
2015 (55)
2012 (18)
2011 (17)
2013 (16)
2010 (9)
2007 (7)
2009 (4)
2008 (3)
2005 (1)
2002 (1)

UNIPROT ID/AC

9544.ENSMMUP00000028270 (19)
A0A1D5QWS0_MACMU (19)
9544.ENSMMUP00000034943 (19)
TPIS_MACMU (19)
I0FUX3_MACMU (19)
F7ACB4_MACMU (19)
9544.ENSMMUP00000041218 (19)
F7HT55_MACMU (19)
F7CJE4_MACMU (19)
H9Z5Y2_MACMU (19)
9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000018047 (19)
H9FPI0_MACMU (19)
F7HSC9_MACMU (19)
9544.ENSMMUP00000028220 (19)
F6SPY0_MACMU (19)
A0A1D5Q3Q0_MACMU (19)
F7EDG2_MACMU (19)
I0FSL5_MACMU (19)
H9Z0R8_MACMU (19)
A0A1D5QFJ9_MACMU (19)
F6PUU7_MACMU (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000012790 (19)
F7FLQ1_MACMU (19)
F6VBK4_MACMU (19)
F7E2S4_MACMU (19)
9544.ENSMMUP00000002527 (19)
A0A1D5QZ63_MACMU (19)
9544.ENSMMUP00000015849 (19)

ENSEMBL ID

ENSG00000170477 (52)
ENSG00000229353 (44)
ENSG00000147251 (24)
ENSG00000247315 (12)
ENSG00000204131 (5)
ENSG00000176092 (4)
ENSMUSP00000141097 (3)
ENSMUSG00000072849 (2)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:18183 (5)
CHEBI:30769 (4)
CHEBI:15756 (4)
CHEBI:27266 (4)
CHEBI:41674 (3)
CHEBI:143054 (3)
CHEBI:88542 (3)
CHEBI:32980 (3)
CHEBI:34698 (3)
CHEBI:82984 (3)
CHEBI:179646 (3)
CHEBI:32389 (3)
CHEBI:34687 (3)
CHEBI:5832 (3)
CHEBI:15929 (3)
CHEBI:17306 (3)
CHEBI:29069 (3)
CHEBI:16831 (3)
CHEBI:30746 (3)
CHEBI:16196 (3)
CHEBI:165591 (3)
CHEBI:75016 (3)
CHEBI:27248 (3)
CHEBI:28621 (3)
CHEBI:34900 (3)
CHEBI:16566 (3)
CHEBI:46961 (3)
CHEBI:74475 (3)
CHEBI:116314 (3)
CHEBI:73531 (3)

Metabolite Name

Adenine (4)
Phthalic acid (3)
Valine (3)
Butylparaben (3)
Phytosphingosine (3)
Benzoic acid (3)
Citric acid (3)
Desaminotyrosine (3)
Palmitic acid (3)
Oleic acid (3)
Adenosine (3)
Pyroglutamic acid (3)
Sucrose (3)
(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)

First Public Date

2023 (23)
2024 (18)
2025 (16)
2026 (12)
2022 (10)
2014 (10)
2021 (8)
2018 (6)
2020 (5)
2019 (4)
2017 (3)
2015 (3)
2013 (3)
2016 (2)

Classification

fungi (3)
bacteria (2)
protozoa (1)

Modification

4x(2)H labeled dimethylated residue (2)
15.994915 (2)
57.021464 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
57.0215 (1)
15.9949 (1)
42.010565 (1)
2x(15)N labeled L-lysine (1)
57.02146 (1)
15.99491 (1)
Not available (1)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (18)
Animal - High-throughput sequencing (4)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
Animal - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Other (1)
ChIP-seq (1)
Proteomic profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (181)
2025 (178)
2022 (174)
2020 (161)
2023 (134)
2019 (133)
2016 (122)
2018 (118)
2024 (113)
2017 (105)
2015 (104)
2014 (96)
2013 (93)
2012 (62)
2011 (46)
2010 (40)
2009 (30)
2008 (27)
2026 (23)
2007 (15)
2005 (9)
2006 (6)
2002 (4)
2004 (1)

Lab affiliation

University of Warwick (8)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (6)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Director ICAR - Central Inland Fisheries Research Institute Manirampore, Barrackpore, Kolkata 700120 (4)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (4)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (4)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (4)
Director CIFRI (3)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (3)
Moffitt Cancer Center Tampa, FL, USA (3)
Center for Neuroscience and Cell Biology – University of Coimbra (3)
Director Cifri (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
CRCI2NA, Nantes University, INSERM, CNRS, Université d’Angers, Nantes, France. (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (2)
IBMM, Univ Montpellier, CNRS, ENSCM, 34095 Montpellier, France (2)
Centro de Investigación Príncipe Felipe, Av. Eduardo Primo Yúfera 3, 46012 Valencia, Spain (2)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (2)
Centre for Proteomic Research, B85, Life Sciences Building, University of Southampton, University Road Highfield, Southampton, Hants. SO17 1BJ United Kingdom (2)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (2)
Stephenson School of Biomedical Engineering, The University of Oklahoma (2)
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (Lopukhin FRCC PCM), Head of the Proteomic Analysis Laboratory (2)
Instituto de Ciencia y Tecnología Animal, Universidad Politècnica de València, Valencia, Spain (2)
Genetics Department, Federal University of Parana, Curitiba, Brazil (2)
Laboratório de Biotecnologia (Unidade de Biologia Integrativa, Setor de Genômica e Proteômica), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, 2000, Campos dos Goytacazes 28013-602, Rio de Janeiro, Brazil (2)

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Comparative analysis of proteomic and metabolomic profiles of different species of Paris

An extract prepared from species of Paris is the most widely consumed herbal product in China. The genus Paris includes a variety of genotypes with different medicinal component contents but only two are defined as official sources. Closely related species have different medicinal properties beca...

2020-01-13 | MTBLS779 | MetaboLights

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Integrated proteomic and metabolomic profiling reveals molecular signatures underlying invasiveness in non-functioning pituitary adenomas

Pituitary adenomas constitute 10 to 25% of intracranial tumors, rendering them one of the most prevalent types of brain tumors. While the majority of pituitary adenomas are benign, ~35% exhibit invasive behavior. Compared with their non-invasive counterparts, invasive pituitary adenomas are more ...

2025-12-09 | MTBLS13478 | MetaboLights

COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS

This SuperSeries is composed of the following subset Series: GSE23672: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AGILENT ARRAYS) GSE33948: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AFFYMETRIX ARRAYS...

ORGANISM(S): Mus musculus

2012-08-12 | E-GEOD-33949 | biostudies-arrayexpress

SK09_Soybean: A Comparative Proteomic Analysis of Engineered and Green Synthesized Silver Nanoparticles on Soybean Seedlings

A Comparative Proteomic Analysis of Engineered and Green Synthesized Silver Nanoparticles on Soybean Seedlings

ORGANISM(S): Glycine Max

2020-06-03 | PXD017326 | JPOST Repository

Comparative SILAC proteomic analysis of Trypanosoma brucei bloodstream and procyclic lifecycle stages.

RANCHE KEY: 6rtELh46IFS7gExEGuFR7E2t3UZABvuzvkh0U5sz71SSZM+XogXG2a8Omdg5+KWQCmjpP30xZWhujBngVbaqsT9ZTpYAAAAAAAAGCw== Original data file: BSF-F3-7.mgf. Data published as part of PLoS One. 2012;7(5):e36619 . From the Abstract: {{i}} ... We have optimized a procedure for growing Trypanosoma brucei pro...

ORGANISM(S): Trypanosoma_brucei_ncbi

GPM11210003129 | GPMDB

Comparative Proteomic Analysis in Acomys cahirinus

Comparative Proteomic Analysis in Scar-Free Skin Regeneration in Acomys cahirinus and Scarring Mus musculus

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2019-11-19 | MSV000084597 | MassIVE

Comparative proteomic study on liver lipid droplets and mitochondria from mouse housed in different temperatures

Laboratory mice are standardly housed around 23ºC, setting them under chronic cold stress. Metabolic changes of liver in mice housed under thermoneutral, standard and cold temperatures remain unknown. Here we isolated lipid droplets and mitochondria from their livers for comparative proteomic study ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2019-07-17 | MSV000084105 | MassIVE

Cerebrospinal fluid-derived extracellular vesicles: a proteomic and transcriptomics comparative analysis of enrichment protocols

PRJNA1281578 | ENA

Integrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform

Acid guanidinium thiocyanate, phenol and chloroform extraction (AGPC) is a commonly used procedure to extract RNA from fresh frozen tissues and cell lines. In addition, DNA and proteins can be recovered, which makes AGPC an attractive source for integrative analysis on tissues of which little materi...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080789 | MassIVE

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