Cooper J J - OmicsDI

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Unknown (5212)
Genomics (80)
Transcriptomics (60)
Proteomics (54)
Metabolomics (13)
Genomic (2)
Models (1)

Organisms

Homo sapiens (124)
Mus musculus (24)
Rattus norvegicus (7)
Equus caballus (5)
synthetic construct (2)
Drosophila melanogaster (2)
Miniopterus schreibersii (1)
Bos grunniens (1)
Papio anubis (1)
Populus trichocarpa x Populus deltoides (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Macaca mulatta (1)
Salmo salar (1)
Acinetobacter baumannii (1)
Plasmodium falciparum (1)
Triticum aestivum (1)
Escherichia coli (1)
Arabidopsis thaliana (1)
Aenocyon dirus (1)
Bos taurus (1)
Brassica carinata (1)
Ictidomys tridecemlineatus arenicola (1)
Lobomonas rostrata (1)
Mesorhizobium loti (1)
Mycolicibacterium smegmatis (1)
Oryctolagus cuniculus (1)
Pseudomonas putida KT2440 (1)
Staphylococcus aureus (1)
Thauera aromatica K172 (1)
x Triticosecale (1)

Organisms

Homo sapiens (4)
Zea mays subsp. mays (1)

Repository

biostudies-arrayexpress (70)
EGA (62)
pride (52)
MetaboLights (13)
ENA (9)
dbGaP (2)
PAXDB (2)
BioModels (1)

Tissue

Brain (9)
Blood (4)
Neutrophil (4)
Cell culture (3)
Fibroblast (2)
Monocyte (2)
Pollen (2)
Primary cell (2)
Stigma (2)
Acute myeloid leukemia cell (1)
B cell (1)
Blood cell (1)
Blood platelet (1)
Blood serum (1)
Bone marrow (1)
Carotid atherosclerotic plaque (1)
Cell suspension culture (1)
Cementum (1)
Cerebrospinal fluid (1)
Cerebrospinal fluid secretion (1)
Common myeloid progenitor (1)
Dental pulp (1)
Dentin (1)
Early embryonic cell (1)
Epithelial cell (1)
Epithelial ovarian cancer cell (1)
Fascia (1)
Forelimb muscle (1)
Heart (1)
Hepatic stellate cell (1)

Disease

Alzheimer's disease (7)
Limb-girdle muscular dystrophy (2)
Adult respiratory distress syndrome (1)
Amyotrophic lateral sclerosis (1)
Atherosclerosis (1)
Brain cancer (1)
Breast cancer (1)
Cardiovascular system disease (1)
Dementia (1)
Fatty liver disease (1)
Leukemia (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Mitochondrial metabolism disease (1)
Plantar fascial fibromatosis (1)
Recurrent staphylococcal infections (1)

Technology Type

Mass Spectrometry (52)
Shotgun proteomics (23)
Bottom-up proteomics (17)
Mass spectrometry (12)
Data-dependent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-independent acquisition (5)
SWATH MS (3)
Illumina HiSeq 2000 (2)
Top-down proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HumanHap 550 (1)
Mass spectrometry assay (1)
Gel-based experiment (1)
Proteogenomics (1)

Instrument Platform

NextSeq 500 (3)
Illumina MiSeq (2)
Illumina NovaSeq 6000 (2)
LTQ FT-Ultra (Thermo Scientific) (2)
FACSAria III (BD Sciences) (1)
HPC (1)
10x Genomics Chromium (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
6520 Q-TOF LC/MS (Agilent) (1)
Gas Chromatography MS - positive (1)
LTQ FT Ultra (Thermo Scientific) (1)
LTQ-FT Ultra (Thermo Scientific) (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2012 (11)
2008 (11)
2025 (11)
2019 (10)
2026 (9)
2024 (8)
2018 (8)
2016 (8)
2014 (7)
2013 (7)
2023 (7)
2022 (7)
2021 (6)
2011 (6)
2015 (5)
2010 (5)
2017 (4)
2020 (4)
2007 (3)
2006 (1)

UNIPROT ID/AC

1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A16A1_MOUSE (2)
AAAT_MOUSE (2)
AATC_MOUSE (2)
AATM_MOUSE (2)
ABCB7_MOUSE (2)
ABCE1_MOUSE (2)
ABCF1_MOUSE (2)
ABCF2_MOUSE (2)
P04637 (1)
P12004 (1)
P24864 (1)
P24941 (1)
P38936 (1)
P78396 (1)
Q13309 (1)
Q9NZJ0 (1)

CHEBI ID

CHEBI:17295 (6)
CHEBI:17895 (6)
CHEBI:16704 (5)
CHEBI:16750 (5)
CHEBI:17596 (5)
CHEBI:15603 (4)
CHEBI:15971 (4)
CHEBI:16015 (4)
CHEBI:16634 (4)
CHEBI:16643 (4)
CHEBI:16828 (4)
CHEBI:17191 (4)
CHEBI:17196 (4)
CHEBI:17568 (4)
CHEBI:18050 (4)
CHEBI:18321 (4)
CHEBI:30769 (4)
CHEBI:14314 (3)
CHEBI:15824 (3)
CHEBI:15903 (3)
CHEBI:16024 (3)
CHEBI:16335 (3)
CHEBI:16414 (3)
CHEBI:16443 (3)
CHEBI:16467 (3)
CHEBI:1670 (3)
CHEBI:16824 (3)
CHEBI:16857 (3)
CHEBI:16991 (1)
CHEBI:33699 (1)

Metabolite Name

L-Leucine (5)
Creatine (4)
Guanosine (4)
L-Histidine (4)
L-Isoleucine (4)
L-Phenylalanine (4)
L-Tyrosine (4)
Phytosphingosine (4)
Uracil (4)
Uridine (4)
Adenosine (3)
Adrenosterone (3)
Betaine (3)
Cellotriose (3)
Cytosine (3)
D-Fructose (3)
D-Gal alpha 1->6D-Gal alpha 1->6D-Glucose (3)
D-Galactose (3)
D-Glucose (3)
D-Mannose (3)
Glycerophosphocholine (3)
Hypoxanthine (3)
Isomaltose (3)
L-Arginine (3)
L-Asparagine (3)
L-Lysine (3)
L-Methionine (3)
L-Proline (3)
L-Valine (3)
Lactose (3)

First Public Date

2023 (2)
2013 (2)
2026 (1)
2025 (1)
2021 (1)
2020 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

University of Liverpool (5)
Division of Cardiovascular Sciences, School of Medical Science, Faculty of Biology, Medicine and Health, The University of Manchester (4)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)
1Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Agriculture and Agri-Food Canada, Canada (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre. (1)
Assistant Professor of Neurosurgery, Stanford University (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
BioArCh, Department of Archaeology, University of York (1)
Biology Department University of Wisconsin-La Crosse 1725 State St. La Crosse, WI 54601 USA (1)
Boston College (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
Chemical and Biological engineering, The University of Sheffield (1)
Children's Medical Research Insitute (1)
Children's Medical Research Institute, Faculty of Medicine and Health, Westmead, NSW, Australia (1)
Children's Medical Research Institute, Westmead, Sydney, Australia (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Musculoskeletal and Ageing Science Institute of Life Course and Medical Sciences University of Liverpool, UK (1)
Division of Cardiovascular Science, School of Medical Sciences, Faculty of Biology Medicine and Health, The University of Manchester (1)
Division of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester (1)
Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA (1)
Head of the Department, Proteomics Core Facility (1)
Helmholtz Centre for Environmental Research - UFZ, Environmental Biotechnology and Technische Universität Berlin, Geobiotechnology (1)
Histon Modifications Group BioMedical Center Ludwig-Maximilians-Universität Großhadernerstr. 9 82152 Planegg-Martinsried Tel: +49 89 2180 75775 (1)
Imperial College London (1)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf, Germany (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Max Planck Institute for Heart and Lung Research, Laboratory for Cell Polarity and Organogenesis, Germany (1)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (1)