Coordinated gene-expression

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Unknown (3007)
Genomics (1725)
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Proteomics (92)
Other (80)
Methylation profiling (29)
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Organisms

Homo sapiens (626)
Mus musculus (588)
Arabidopsis thaliana (150)
Saccharomyces cerevisiae (68)
Drosophila melanogaster (64)
Rattus norvegicus (56)
Oryza sativa (28)
Danio rerio (27)
Caenorhabditis elegans (20)
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Oryza sativa Japonica Group (7)
Saccharomyces cerevisiae S288C (5)
Synechocystis sp. PCC 6803 (5)
Macaca mulatta (5)
Streptococcus pyogenes (4)
Haloarcula hispanica (3)
Ciona intestinalis (3)
Gossypium hirsutum (2)
Lepidium sativum (2)
Aedes aegypti (2)
Glycine max (2)

Organisms

Mus musculus (400)
Homo sapiens (390)
Arabidopsis thaliana (69)
Drosophila melanogaster (42)
Saccharomyces cerevisiae (34)
Rattus norvegicus (29)
Oryza sativa (18)
Danio rerio (17)
Caenorhabditis elegans (15)
Gallus gallus (7)
Zea mays (7)
Plasmodium falciparum (7)
Bos taurus (6)
Oryza sativa Japonica Group (6)
Synechocystis sp. PCC 6803 (5)
Oryza sativa Indica Group (5)
Vitis vinifera (5)
Sus scrofa (5)
Ursus americanus (4)
Camponotus floridanus (4)
Plasmodium falciparum 3D7 (4)
Dictyostelium discoideum (4)
Candida albicans (4)
Papio hamadryas (3)
Oncorhynchus mykiss (3)
Macaca mulatta (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Schizosaccharomyces pombe (3)
Triticum aestivum (3)
Canis lupus familiaris (3)

Repository

ENA (1428)
geo (1120)
biostudies-arrayexpress (799)
pride (64)
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PAXDB (1)

Tissue

Cell culture (12)
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Normal (4)
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Duchenne muscular dystrophy (1)
Giardiasis (1)
Myotonic dystrophy type 1 (1)
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Spinal cord (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (26)
Bottom-up proteomics (23)
Mass spectrometry assay (13)
Mass spectrometry (12)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (4)
Gel-based experiment (4)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
Illumina HiSeq 2000 (1)
RNA mass spectrometry (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (23)
Illumina HiSeq 2500 (8)
Illumina NovaSeq 6000 (8)
Illumina MiSeq (4)
Illumina HiSeq 4000 (4)
454 GS FLX+ (2)
ScanArray 6000 [Perkin Elmer] (2)
Affymetrix Fluidics Station 400 (2)
Axon GenePix 4000B scanning hardware (2)
NextSeq 550 (2)
NextSeq 500 (2)
GeneTitan MultiChannel System (1)
GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
GeneChip Pico Kit (Affymetrix/ThermoFisher) (1)
ReliaPrep RNA Miniprep System (Promega) (1)
Adipocyte Progenitor Isolation Kit (Miltenyi Biotec) (1)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
Axon-GenePix 4100A (1)
RNeasy Plant Mini Kit (Qiagen) (1)
10X Genomics Chromium (1)
I686 (1)
GenePix 4000B Microarray Scanner (Molecular Devices). (1)
Scanning of was performed on an Axon 4000B scanner (1)
Illumina iScan (1)
Illumina Genome Analyzer (1)
GenePix 4000A [Axon Instruments] (1)

Publication Date

2026 (212)
2014 (151)
2025 (144)
2015 (122)
2013 (116)
2010 (113)
2008 (111)
2024 (99)
2012 (99)
2011 (95)
2007 (94)
2023 (92)
2022 (82)
2021 (77)
2020 (75)
2016 (74)
2009 (63)
2018 (53)
2017 (51)
2019 (45)
2006 (40)
2005 (24)
2003 (4)
2004 (3)

UNIPROT ID/AC

O54910 (2)
Q60778 (2)
O88522 (2)
Q60680 (2)
O88351 (2)
P25799 (2)
Q9Z1E3 (2)
P32581 (1)
P21190 (1)
P53438 (1)
P39001 (1)
P38615 (1)
1433A_TOBAC (1)
1433B_TOBAC (1)
1433C_TOBAC (1)
1433D_TOBAC (1)
1433E_TOBAC (1)
1433F_TOBAC (1)
1433_TOBAC (1)
4CL1_TOBAC (1)
4CL2_TOBAC (1)
A0A024AXE8_TOBAC (1)
A0A059TCI1_TOBAC (1)
A0A059TCI3_TOBAC (1)
A0A067ZTA7_TOBAC (1)
A0A068JFR6_TOBAC (1)
A0A068LMB8_TOBAC (1)
A0A075EYP9_TOBAC (1)
A0A075EYQ1_TOBAC (1)
A0A075EYQ4_TOBAC (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000176092 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:15978 (4)
CHEBI:30769 (4)
CHEBI:15901 (3)
CHEBI:17992 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:15676 (3)
CHEBI:17505 (3)
CHEBI:16634 (3)
CHEBI:16551 (3)
CHEBI:28044 (3)
CHEBI:28790 (3)
CHEBI:27266 (3)
CHEBI:18257 (3)
CHEBI:17115 (3)
CHEBI:16015 (3)
CHEBI:15428 (3)
CHEBI:17053 (3)
CHEBI:16199 (3)
CHEBI:26078 (3)
CHEBI:15756 (3)
CHEBI:17579 (2)
CHEBI:28838 (2)
CHEBI:25501 (2)
CHEBI:18024 (2)
CHEBI:17327 (2)
CHEBI:15725 (2)
CHEBI:76341 (2)
CHEBI:17521 (2)
CHEBI:16433 (2)

Metabolite Name

L-Valine (6)
Betaine (5)
Coumarin (5)
Nicotinamide (5)
Choline (5)
Adenosine (5)
Cytosine (5)
L-Tryptophan (5)
L-Glutamine (5)
Gly-Val (5)
Cytidine (5)
Creatine (5)
L-Tyrosine (5)
L-Phenylalanine (5)
Lumichrome (4)
L-Threonine (4)
Biliverdin (4)
4-Hydroxybenzaldehyde (4)
Erucamide (4)
L-Proline (4)
Oleamide (4)
Tyramine (4)
Succinate (4)
Riboflavin (4)
Deoxyinosine (4)
Adenine (4)
Guanosine (4)
Uridine (4)
Creatinine (4)
L-Leucine (4)

First Public Date

2014 (248)
2026 (238)
2025 (165)
2024 (130)
2023 (123)
2022 (91)
2020 (75)
2021 (72)
2015 (60)
2017 (59)
2019 (56)
2018 (40)
2013 (37)
2016 (33)
2011 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Not yet recruiting (1)

Lab affiliation

Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain (3)
Peking University (2)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1Max Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg1 D-14476, Potsdam-Golm, Germany. (1)
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Str. 4 85354 Freising Germany (1)
Bioanalytical Mass Spectrometry Facility, Mark Wainwright Analytical Centre, University of New South Wales Sydney, NSW 2052, Australia. Palaeontology, Geobiology and Earth Archives Research Centre, University of New South Wales Sydney, NSW 2052, Australia. (1)
Boston University (1)
Centre for Genomic Regulation (1)
Centre for Proteomics and Metabolomics Head Proteomics group LUMC (1)
College of Life Sciences, Jilin Agricultural University, Changchun 130118,China (1)
Department of Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
Department of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea (1)
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India (1)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), Trondheim, Norway (1)
Department of Genetics, Harvard Medical School (1)
Department of Medical Biochemistry, Medical University of Lodz, 92-215 Lodz, Poland (1)
Department of Pathophysiology, Second Faculty of Medicine, Charles University in Prague (1)
Division of Chemistry I, Department of Medical Biochemistry & Biphysics, Karolinska Institutet, Stockholm, Sweden (1)
Département de Biologie, Université de Moncton, Moncton (NB, Canada) (1)
EDyP (1)
ETH Zurich (1)
Geriatrics and Gerontology, Department of Medicine, University of Wisconsin - Madison (1)
Harbin Medical University (1)
Harvard School of Public Health (1)
IRCCS Istituto G Gaslini (1)
Institute of Molecular Bacteriology, TWINCORE – Centre for Experimental and Clinical Infection Research GmbH, 30625 Hanover, Germany; Institute of Molecular Bacteriology, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany (1)
Jiaxing University Master Degree Cultivation Base, Zhejiang Chinese Medical University, Hangzhou, China (1)

IsPrivate

False (3)

Classification

bacteria (20)
protozoa (18)
fungi (8)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (508)
RNA-seq of coding RNA (110)
ChIP-seq (52)
Unknown experiment type (30)
Methylation profiling by array (14)
RNA-seq of coding RNA from single cells (11)
ChIP-chip by tiling array (10)
Other (10)
RNA-seq of non coding RNA (7)
Transcription profiling by SAGE (6)
Transcription profiling by tiling array (6)
ChIP-chip by array (6)
Methylation profiling by high throughput sequencing (6)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
Baseline (1)
Differential (1)
RIP-chip by array (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
RIP-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
Interventional (1)

Release Date

2025 (364)
2014 (245)
2022 (215)
2021 (205)
2016 (202)
2013 (197)
2010 (194)
2024 (192)
2023 (192)
2015 (191)
2020 (177)
2019 (177)
2012 (172)
2011 (162)
2018 (160)
2017 (156)
2008 (145)
2009 (110)
2007 (108)
2026 (84)
2006 (58)
2005 (43)
2004 (19)
2003 (12)
2002 (9)
2001 (5)
2000 (5)
1999 (3)
1998 (3)

Location

New Zealand (1)

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Aqueous Artemisia argyi extract mitigates acute lung injury in association with coordinated alterations in gut microbiota, metabolic homeostasis, and pulmonary inflammatory gene expression

Background: Artemisia argyi is a traditional medicinal herb with established anti-inflammatory and immunomodulatory properties. Its aqueous extract (AEAA), enriched in water-soluble bioactive constituents, exhibits favorable safety and bioavailability; however, its potential protective effects again...

2026-03-27 | MTBLS14160 | MetaboLights

Aqueous Artemisia argyi extract mitigates acute lung injury in association with coordinated alterations in gut microbiota, metabolic homeostasis, and pulmonary inflammatory gene expression

his study investigated the metabolic alterations in colonic contents associated with aqueous extract of Artemisia argyi (AEAA) intervention in a lipopolysaccharide (LPS)-induced acute lung injury (ALI) mouse model. Male C57BL/6 mice were randomly divided into control, LPS, and AEAA treatment groups ...

2026-03-27 | MTBLS14155 | MetaboLights

Growth Rate Dependent and Nutrient-specific Gene Expression Resource Allocation in Fission Yeast

Cellular resources are limited and their relative allocation to gene expression programmes determines physiological states and global properties such as the growth rate. Quantitative studies using various growth conditions have singled out growth rate as a major physiological variable explaining rel...

ORGANISM(S): Schizosaccharomyces pombe OY26

2022-02-24 | PXD027835 | Pride