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TranscriptomicsWidespread, focal copy number variations (CNV) in Trypanosoma cruzi strains
Trypanosoma cruzi is a protozoan parasite and the etiologic agent of Chagas disease, an important public health problem in Latin America. T. cruzi is diploid, almost exclusively asexual, and displays an extraordinarily diverse population structure both genetically and phenotypically. Yet, to date ...
ORGANISM(S): Trypanosoma cruzi 
2011-08-05 | E-GEOD-23576 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GenomeWideSNP_6)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28111 | biostudies-arrayexpress
TranscriptomicsMaize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
Following the domestication of maize over the past ,10,000 years, breeders have exploited the extensive genetic diversity of this species to mold its phenotype to meet human needs. The extent of structural variation, including copy number variation (CNV) and presence/absence variation (PAV), which a...
ORGANISM(S): Zea mays 
2009-11-19 | E-GEOD-16938 | biostudies-arrayexpress
TranscriptomicsCopy number variation in the bovine genome
Copy number variations (CNVs), which represent a significant source of genetic diversity in mammals, are currently being associated with phenotypes of clinical relevance, mostly in humans and mice. Notwithstanding, little is known about the extent of CNV that contributes to genetic variation in catt...
ORGANISM(S): Bos taurus 
2010-04-22 | E-GEOD-18174 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 18 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28102 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 33 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-30312 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni2.5-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 14 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28101 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human660W-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28103 | biostudies-arrayexpress
TranscriptomicsA comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (HumanOmni1-Quad)
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling. 36 Samples
ORGANISM(S): Homo sapiens 
2011-06-30 | E-GEOD-28104 | biostudies-arrayexpress
TranscriptomicsImproved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes
Goal: To identify copy number variation in normal individuals using high density, non-polymorphic oligonucleotide probes Background DNA sequence diversity within the human genome may be more greatly affected by copy number variations (CNVs) than single nucleotide polymorphisms (SNPs). Although the ...
ORGANISM(S): Homo sapiens 
2008-04-24 | E-GEOD-9053 | biostudies-arrayexpress
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