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TranscriptomicsArabidopsis thaliana and Arabidopsis lyrata degradomes
Deep sequencing of the 5' ends of uncapped, polyA-enriched mRNA from two biological replicate samples from Arabidopsis thaliana inflorescences, as well as two biological replicates of Arabidopsis lyrata inflorescences. These data were used to experimentally identify sliced microRNA targets from the...
ORGANISM(S): Arabidopsis thaliana 
2010-04-22 | E-GEOD-20451 | biostudies-arrayexpress
TranscriptomicsArabidopsis lyrata flowering tissues small RNAs
Small RNA sequences from Arabidopsis lyrata flowering tissues, as isolated from flowering tissues of two biological replicates. These data were analyzed to 1) discover new micoRNAs in A. lyrata 2) examine microRNA processing accuary in A. lyrata and 3) to examine patterns of 24nt siRNA accumulation...
ORGANISM(S): Arabidopsis lyrata 
2010-04-22 | E-GEOD-20442 | biostudies-arrayexpress
TranscriptomicsArabidopsis lyrata small RNAs
Small RNA sequences from Arabidopsis lyrata leaves, as isolated from a single sample of rosette leaf tissue. These data were analyzed to 1) examine microRNA processing accuracy in A. lyrata and 2) to examine patterns of 24nt siRNA accumulation in A. lyrata. A single small RNA library from rosette l...
ORGANISM(S): Arabidopsis lyrata 
2010-03-01 | E-GEOD-18077 | biostudies-arrayexpress
TranscriptomicsSmall RNAs from dcl3 and rdr6 mutants of Physcomitrella
Endogenous 24nt short interfering RNAs (siRNAs) derived mostly from intergenic and repetitive genomic regions constitute a major class of endogenous small RNAs in Arabidopsis thaliana. Accumulation of A. thaliana 24nt siRNAs requires the Dicer family member DCL3, and clear homologs of DCL3 exist in...
ORGANISM(S): Physcomitrella patens 
2008-12-19 | E-GEOD-12468 | biostudies-arrayexpress
TranscriptomicsReference annotation for small RNA-producing genes in maize
The goal of the project is to produce a standard annotation of the loci producing small RNAs in the maize genome. To achieve this goal we produced small RNA libraries from four different maize tissues, which will allow the identification of tissue-specific small RNA expression. The availability of b...
ORGANISM(S): Zea mays 
2016-02-09 | E-GEOD-77657 | biostudies-arrayexpress
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