Costa N N - OmicsDI

Show results for

Unknown (5288)
Transcriptomics (171)
Proteomics (113)
Genomics (56)
Metabolomics (22)
Models (1)

Organisms

Homo sapiens (153)
Mus musculus (66)
Saccharomyces cerevisiae (16)
Arabidopsis thaliana (14)
Rattus norvegicus (11)
Bos taurus (5)
Escherichia coli (4)
Sus scrofa (3)
Plasmodium falciparum 3D7 (2)
Jatropha curcas (1)
Stenotrophomonas maltophilia (1)
Leishmania chagasi (1)
Methanococcus maripaludis S2 (1)
Picea engelmannii x Picea glauca (1)
Solea senegalensis (1)
Heliconius melpomene rosina (1)
Euphausia superba (1)
Prunus persica (1)
Heliconius melpomene (1)
Sparus aurata (1)
Citrus sinensis (1)
Paracoccidioides brasiliensis (1)
Vitis vinifera (1)
Oncorhynchus mykiss (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Drosophila melanogaster (1)
Danio rerio (1)
Euphorbia dendroides (1)

Organisms

soil metagenome (2)
Homo sapiens (2)
Neoraja iberica (1)
oil field metagenome (1)
uncultured prokaryote (1)
aquatic metagenome (1)
Nakaseomyces glabratus (1)
Theobroma cacao (1)
marine metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (184)
pride (109)
EGA (21)
ENA (20)
MetaboLights (18)
MassIVE (4)
geo (3)
GNPS (3)
BioModels (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (18)
Brain (10)
Blood (7)
Blood plasma (7)
Blood cell (5)
Epithelial cell (4)
Bone marrow (3)
Colon (3)
Heart (3)
Kidney (3)
Lung (3)
B cell (2)
Cerebrospinal fluid (2)
Embryo (2)
Liver (2)
Oocyte (2)
Pancreas (2)
Sciatic nerve (2)
Stem cell (2)
T cell (2)
Blood (1)
Antenna (1)
Astrocyte (1)
Bile (1)
Bile duct (1)
Blood platelet (1)
Blood serum (1)
Blood-lymph (1)
Bronchoalveolar lavage (1)
Cardiac muscle cell (1)

Disease

Colon cancer (4)
Lung cancer (3)
Multiple sclerosis (3)
Uveal melanoma (3)
Brain cancer (2)
Breast cancer (2)
Chagas disease (2)
Neuroblastoma (2)
Plasmodium falciparum malaria (2)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Polycythemia vera (1)
Burkitt lymphoma (1)
Coronary artery disease (1)
Normal (1)
Metabolic syndrome (1)
Acute leukemia (1)
Alzheimer's disease 1 (1)
Chikungunya (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Gastric adenocarcinoma (1)
Head and neck cancer (1)
Influenza (1)
Kidney cancer (1)
Leishmaniasis (1)
Lung carcinoma (1)
Lymphoma (1)

Technology Type

Mass Spectrometry (110)
Shotgun proteomics (66)
Bottom-up proteomics (24)
Mass spectrometry (17)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (6)
HDMSE (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
NMR spectroscopy (2)
MSE (2)
SWATH MS (2)
Top-down proteomics (2)
AB 5500 Genetic Analyzer (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Life Tech - Solid (1)
Mass spectrometry assay (1)
ESI (1)
All-ion fragmentation (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Illumina HiSeq 2000 (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina NovaSeq 6000 (3)
NextSeq 500 (3)
LTQ Orbitrap XL (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2500 (2)
Q Exactive (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Nuclear Magnetic Resonance (NMR) - (2)
Cell Ranger (1)
Computational analysis using R (Seurat v5.0.0) (1)
PromethION (1)
Not applicable (1)
Illumina Genome Analyzer IIx (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
Scanning hardware (1)
10x Genomics Chromium Controller (1)
N/A (1)
LTQ Orbitrap Elite (1)
Q Exactive Plus (1)
Dionex UltiMate 3000 RSLC System (Thermo) (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2010 (29)
2012 (28)
2015 (25)
2013 (23)
2022 (22)
2014 (21)
2023 (20)
2026 (18)
2021 (18)
2020 (17)
2025 (15)
2024 (14)
2016 (14)
2011 (13)
2019 (11)
2008 (8)
2017 (7)
2018 (6)
2009 (5)
2006 (4)
2007 (3)
2004 (1)

UNIPROT ID/AC

P92973 (1)
Q6R0H1 (1)
Q8L500 (1)
Q93WK5 (1)
Q94BT6 (1)
Q9LKL2 (1)
Q9SQI2 (1)

CHEBI ID

CHEBI:17521 (7)
CHEBI:30769 (7)
CHEBI:15756 (5)
CHEBI:18183 (5)
CHEBI:28527 (5)
CHEBI:15354 (4)
CHEBI:16112 (4)
CHEBI:16243 (4)
CHEBI:16860 (4)
CHEBI:22660 (4)
CHEBI:28499 (4)
CHEBI:28875 (4)
CHEBI:520 (4)
CHEBI:65751 (4)
CHEBI:7916 (4)
CHEBI:141139 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:16015 (3)
CHEBI:16027 (3)
CHEBI:16335 (3)
CHEBI:17154 (3)
CHEBI:17203 (3)
CHEBI:17234 (3)
CHEBI:17750 (3)
CHEBI:18012 (3)
CHEBI:25094 (3)
CHEBI:33699 (1)
CHEBI:35222 (1)
CHEBI:36080 (1)

Metabolite Name

3-O-methylquercetin (3)
Palmitic acid (3)
Quinic acid (3)
1,5-dicaffeoylquinic acid (2)
2,3,5-tricaffeoylaltraric acid (2)
2,4,5-tricaffeoylaltraric acid (2)
Altraric acid (2)
Biflavonoid (2)
Citrate (2)
Citric acid (2)
Fumarate (2)
Glutamine (2)
Kaempferol (2)
Linoleic acid (2)
Longipilin acetate (2)
Malate (2)
Oleic acid (2)
Polymatin B (2)
Protocatechuic acid (2)
Quercetin (2)
Stearic acid (2)
Succinate (2)
Thymidine (2)
Uracil (2)
(15Z)-9,12,13-Trihydroxy-15-octadecenoic acid (1)
(3-Methyl-3-oxetanyl)methyl 4-methylbenzenesulfonate (1)
(3S,5R,10R,12S,14S,15R,16R)-3,5,10,14,15-Pentahydroxy-12,16-dimethyl-2-icosanone (1)
(Nω-L-arginino)succinic acid (1)
(R)-2-hydroxystearic acid (1)
(R)-3-Hydroxybutyric acid (1)

First Public Date

2026 (3)
2023 (3)
2021 (3)
2019 (3)
2020 (2)
2014 (2)
2025 (1)
2022 (1)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

CRG, UPF (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Medical University of Vienna (2)
School of Biomedical and Healthcare Sciences; Plymouth University (UK) (2)
Technische Universität Berlin The University of Edinburgh (2)
1- CIISA - Centre for Interdisciplinary Research in Animal Health, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal 2- AL4AnimalS - Associate Laboratory for Animal and Veterinary Sciences, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal (1)
1- i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
1- i3S - Instituto de Investigação e Inovação em Saúde,Universidade do Porto, Portugal 2- IBMC - Instituto de Biologia Celular e Molecular, Universidade do Porto, Portugal 3- ICBAS - Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Portugal (1)
Basic Sciences, College of Veterinary Medicine (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Reseach and Utrecht Institute of Pharmaceutical Sciences Utrecht University Padualaan 8, 3584 CH Utrecht, The Netherland (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre Cambridge Biomedical Campus, University of Cambridge, Cambridge, CB2 0AW, UK. (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Center for Genomic Regilation, University Pompeu Fabra (1)
Center for Genomic Regulation, Universitat Pompeu Fabra, 08003 Barcelona, Spain (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Center of Allergy and Environment (ZAUM), Technical University of Munich and Helmholtz Center Munich, 80802 Munich, Germany Department of Immunobiology, Université de Lausanne, 1066 Epalinges, Switzerland (1)
Centre for Haemato-Oncology Barts Cancer Institute Queen Mary, University of London (1)
Centro de Análises Proteômicas e Bioquímicas, Universidade Católica de Brasília, Brasília, Brazil. S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brazil. (1)
Chair of Proteomics and Bioanalytics, TU Munich (1)
Charite Ophthalmology / MDC Cellular Neuroscience (1)
Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Ctra de Can Ruti, Camí de les Escoles s/n, 08916, Badalona, Barcelona, Spain (1)
Chromosomal Replication Laboratory, Institute for Cancer and Genomic Sciences, IBR west, WX2.62, University of Birmingham, Edgbaston, Birmingham, B15 2TT (1)
Computational Mass Spectrometry & Proteomics Group Carlos Chagas Institute, Fiocruz - PR Brazil (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICASUNIVERSIDADE NOVA DE LISBOARua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Computational and Experimental Biology Group, CEDOC, Chronic Diseases Research Centre, NOVA Medical School, Faculdade de Ciencias Medicas, Universidade NOVA de Lisboa, Campo dos Martires da Patria, 130, 1169-056 Lisboa, Portugal (1)