Cox Michael M - OmicsDI

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Unknown (265)
Proteomics (60)
Transcriptomics (41)
Genomics (15)
Metabolomics (4)
Genomic (1)
Other (1)

Organisms

Chlamydomonas reinhardtii (53)
Enterococcus mundtii CRL35 (53)
Oncorhynchus tshawytscha (53)
Pseudomonas canadensis (53)
Human alphaherpesvirus 1 strain 17 (53)
Marchantia polymorpha subsp. ruderalis (53)
Methylocystis sp. (53)
Exiguobacterium sp. SH31 (53)
Amaranthus tricolor (53)
Porites pukoensis (53)
Porphyromonas gingivalis W83 (53)
Human betaherpesvirus 5 (53)
Bothrops insularis (53)
Bothrops jararaca (53)
Bothrops jararacussu (53)
Bothrops cotiara (53)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (53)
Severe acute respiratory syndrome coronavirus 2 (53)
Dinosauria (53)
Pseudomonas [fluorescens] SBW25 (53)
Fasciola hepatica (53)
Streptomyces coelicolor (53)
Homo sapiens (37)
Mus musculus (12)
Mycobacterium tuberculosis (3)
Saccharomyces cerevisiae (2)
Ciona intestinalis (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Rattus norvegicus (1)

Repository

pride (53)
biostudies-arrayexpress (43)
EGA (13)
MassIVE (4)
GNPS (2)
MetaboLights (2)
PeptideAtlas (2)
dbGaP (1)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (14)
Permanent cell line cell (6)
Embryonic stem cell (5)
Egg (5)
Photosynthetic cell (4)
Epithelial cell (3)
Early embryonic cell (2)
Blood plasma (2)
Plant embryo (1)
Peritubular myoid cell (1)
Adult organism (1)
Egg cell (1)
Plant cell (1)
Brain (1)
Cell suspension culture (1)
Embryo (1)
Testis (1)
Spleen (1)
Leaf (1)
Fibroblast (1)
Erythrocyte (1)
Hepatocyte (1)
Kidney (1)
Liver (1)
Colon (1)
T cell (1)

Disease

Colon cancer (2)
Carcinoma (1)
Acute myeloid leukemia (1)
Not Available (1)
Azoospermia (1)
Hepatocellular carcinoma (1)
Huntington Disease (1)
Visceral leishmaniasis (1)
Disease free (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (27)
Affinity purification coupled with mass spectrometry proteomics (21)
Bottom-up proteomics (7)
Gel-based experiment (4)
Data-dependent acquisition (4)
Data-independent acquisition (2)
Illumina Genome Analyzer II (1)
NMR spectroscopy (1)
Mass spectrometry (1)
SWATH MS (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (3)
Illumina HiSeq 2500 (2)
LTQ Orbitrap (2)
GC/MS Agilent MSD5977B (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2023 (10)
2021 (10)
2012 (9)
2008 (9)
2022 (9)
2024 (7)
2014 (6)
2011 (6)
2009 (6)
2025 (6)
2020 (6)
2018 (5)
2017 (4)
2010 (4)
2007 (3)
2026 (3)
2019 (2)
2016 (1)

UNIPROT ID/AC

ORC6_YEAST (1)
NAP1_YEAST (1)
GGC1_YEAST (1)
CBK1_YEAST (1)
MCFS1_YEAST (1)
ARI1_YEAST (1)
RMT2_YEAST (1)
HCH1_YEAST (1)
NTM1_YEAST (1)
YKT6_YEAST (1)
SECU_YEAST (1)
NSG1_YEAST (1)
EAF3_YEAST (1)
H3_YEAST (1)
MMS1_YEAST (1)
OYE2_YEAST (1)
ACON_YEAST (1)
TPS2_YEAST (1)
REB1_YEAST (1)
NLE1_YEAST (1)
NAA25_YEAST (1)
SPC98_YEAST (1)
FKH2_YEAST (1)
RUXE_YEAST (1)
TIM21_YEAST (1)
IES2_YEAST (1)
YD286_YEAST (1)
NOC3_YEAST (1)
DRS1_YEAST (1)
GATB_YEAST (1)

CHEBI ID

CHEBI:17148 (2)
CHEBI:15741 (2)
CHEBI:17306 (2)
CHEBI:14314 (2)
CHEBI:16027 (2)
CHEBI:194376 (1)
CHEBI:11814 (1)
CHEBI:165842 (1)
CHEBI:18303 (1)
CHEBI:27847 (1)
CHEBI:16894 (1)
CHEBI:191711 (1)
CHEBI:17980 (1)
CHEBI:17837 (1)
CHEBI:16337 (1)
CHEBI:17885 (1)
CHEBI:37050 (1)
CHEBI:144330 (1)
CHEBI:133083 (1)
CHEBI:16039 (1)
CHEBI:17167 (1)
CHEBI:16595 (1)
CHEBI:43433 (1)
CHEBI:177051 (1)
CHEBI:15533 (1)
CHEBI:24040 (1)
CHEBI:21519 (1)
CHEBI:17290 (1)
CHEBI:35425 (1)
CHEBI:24309 (1)

Metabolite Name

Uridine 5-diphosphate (1)
Propionyl coenzyme A (1)
Phosphatidic Acid (1)
Orotidine 5-monophosphate (1)
N-Formylanthranilic acid (1)
Ketoglutaric acid (1)
Inosine 5-triphosphate (1)
Guanosine 5-triphosphate (1)
Guanosine 5-diphosphate (1)
D-myo-Inositol-1,4,5-triphosphate (1)
Deoxyguanylate (1)
Cytidine 5-triphosphate (1)
Cytidine 5-diphosphocholine (1)
Cytidine 5-diphosphate (1)
Acetylamino-acetic acid (1)
6-Deoxy-L-galactonic acid (1)
3-Phosphoadenosine 5-phosphosulfate (1)
3-hydroxypentanedioic acid (1)
3-Hydroxybutyryl coenzyme A (1)
2-Deoxyuridine 5-monophosphate (1)
2-Deoxyribose-5-phosphate (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxycytidine 5-diphosphate (1)
2-Deoxy-5-cytidylic acid (1)
2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphoglucose (1)
Uridine 5-diphosphogalactose (1)
Pyridoxamine-5-phosphate (1)
N-Hexanoyl-glycine (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (25)
Comparative genomic hybridization by array (4)
ChIP-chip by tiling array (2)
Genotyping by array (2)
Other (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (36)
2025 (32)
2024 (29)
2022 (28)
2023 (26)
2016 (21)
2020 (15)
2015 (15)
2017 (14)
2018 (12)
2014 (11)
2012 (10)
2011 (9)
2010 (9)
2019 (9)
2009 (8)
2013 (8)
2008 (6)
2007 (4)
2026 (4)
2006 (1)
2005 (1)

Lab affiliation

Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (8)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (2)
Molecular Biotechnology & Systems Biology, TU Kaiserslautern, Kaiserslautern, Germany (2)
Professor of Computational Biology Division Head, Evolution and Genomic Sciences School of Biological Sciences | Faculty of Biology, Medicine and Health The University of Manchester, Michael Smith Building, Manchester M13 9PT (1)
Drug Discovery Unit, Wellcome Centre for Anti-Infectives Research, Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, United Kingdom (1)
Center for Genomic Science Innovation Department of Biochemistry University of Wisconsin-Madison (1)
Center for Precision Medicine at Wake Forest University School of Medicine (1)
Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland (1)
Department of Pediatric Respiratory Medicine, Immunology and Critical Care Medicine, Charite ‐ Universitatsmedizin, Germany; German Center for Lung Research (DZL), Associated Partner Site, Germany; Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Germa (1)
NNF CPR, Copenhagen Univeristy, Denmark (1)
Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Martinsried, Germany (1)
Gene Center of the LMU Munich, LAFUGA Proteomics department, AG Fröhlich Group (1)
WWU Muenster Institute of Plant Biology and Biotechnology (IBBP) (1)
Wake Forest School of Medicine (1)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (1)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (1)
University of Copenhagen, Department of biology (BIO) Ole Maaloe vej 5, 2200 Copenhagen N, Denmark (1)
Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen (1)
Division of Cancer Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Cancer Research Centre, Wilmslow Road, Manchester M20 4GJ, United Kingdom (1)
Professor Dept. Cell Biology Emory University 615 Michael Street Whitehead 446 Atlanta, GA, 30322 (1)
The Institute for Medical Research Israel-Canada, The Hebrew University Medical School, Jerusalem, Israel (1)
University of Muenster, Institute of Plant Biology and Biotechnology (1)
Stanford, Biology department (1)
Department of Chemistry and Bioscience Aalborg University Denmark (1)
School of Civil & Environmental Engineering and School of Chemical Engineering, University of New South Wales, Sydney, Australia (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (1)
Biocenter, Faculty of Biology, Genetics, Ludwig-Maximilians-University Munich (LMU), 82152 Martinsried, Germany (1)
Program in Cell Biology Hospital For Sick Children, Toronto, SPARC BioCentre Hospital For Sick Children, Toronto, 8Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (1)
WWU Münster IBBP (1)

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Role of M. tuberculosis in CO sensing

This SuperSeries is composed of the following subset Series: GSE11095: Dose response of carbon monoxide treatment of M. tuberculosis GSE11096: Role of M. tuberculosis dosS and dosT in CO sensing Refer to individual Series

ORGANISM(S): Mycobacterium tuberculosis

2008-05-28 | E-GEOD-10897 | biostudies-arrayexpress

Role of M. tuberculosis dosS and dosT in CO sensing

Transcriptional profiling of M. tuberculosis dosR and dosS mutants and wild type growing in log phase treated with carbon monoxide or nitric oxide versus untreated controls Keywords: Genetic modification Two condition experiment, DETANO treated cells at 100 uM or CO treated cells at 20000 ppm versus...

ORGANISM(S): Mycobacterium tuberculosis

2008-05-28 | E-GEOD-11096 | biostudies-arrayexpress

Dose response of carbon monoxide treatment of M. tuberculosis

Transcriptional profiling of M. tuberculosis growing in log phase treated with various concentrations of carbon monoxide versus untreated controls Keywords: Dose response Two condition experiment, CO treated cells at 2000, 200 and 20 ppm versus untreated controls. Biological replicates: 2 replicates...

ORGANISM(S): Mycobacterium tuberculosis

2008-05-29 | E-GEOD-11095 | biostudies-arrayexpress

Synthesis of Michael Adducts as Key Building Blocks for Potential Analgesic Drugs: In vitro, in vivo and in silico Explorations.

Not available

S-EPMC8001115 | biostudies-literature

Chromosomal changes in primary human uveal melanomas [UCSF]

Uveal melanoma is the most common cancer of the eye arising from melanocytes within the choroid, ciliary bodies and iris. Almost half of uveal melanomas metastasize hematogenously to distant organs, most often the liver, where the disease becomes fatal. One of the first genetic alterations to be i...

ORGANISM(S): Homo sapiens

2012-12-06 | E-GEOD-42739 | biostudies-arrayexpress

Machine Learning Based Classification of Diffuse Large B-cell Lymphoma Patients by their Protein Expression Profiles

Characterization of tumors at the molecular level has improved our knowledge of cancer causation and progression. Proteomic analysis of their signaling pathways promises to enhance our understanding of cancer aberrations at the functional level, but this requires accurate and robust tools. Here, we ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-30 | MSV000080813 | MassIVE

Machine Learning Based Classification of Diffuse Large B-cell Lymphoma Patients by their Protein Expression Profiles.

Data from ProteomeXchange, PXD ID: PXD002052. Experiment: TRR37, file: folder summary. Published as part of Mol Cell Proteomics. 2015 Aug 26 . From the Abstract: {{i}} ... Here, we develop a state of the art quantitative mass spectrometric pipeline to characterize formalin-fixed paraffin-embedded (...

ORGANISM(S): Homo_sapiens_viruses, Human

GPM32320017943 | GPMDB

Resource Reanalysis