Crop engineering

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Unknown (6765)
Transcriptomics (206)
Genomics (142)
Metabolomics (20)
Proteomics (19)
Other (8)
Methylation profiling (2)
Models (1)

Organisms

Arabidopsis thaliana (33)
Oryza sativa (18)
Zea mays (17)
Solanum lycopersicum (15)
Mus musculus (13)
Glycine max (10)
Oryza sativa Japonica Group (9)
Bombyx mori (8)
Triticum aestivum (8)
Gossypium hirsutum (7)
Solanum tuberosum (7)
Oryza sativa Indica Group (6)
Hordeum vulgare (5)
Homo sapiens (5)
Sorghum bicolor (4)
Brassica juncea (3)
Brassica rapa (3)
Brassica napus (3)
Vitis vinifera (3)
Nicotiana tabacum (3)
Cicer arietinum (2)
Saccharum hybrid cultivar (mixed) (2)
Allium cepa (2)
Capsicum annuum (2)
Danio rerio (2)
Coccinella septempunctata (1)
Spodoptera exigua (1)
Agaricus bisporus (1)
Solanum melongena (1)
Boehmeria nivea (1)

Organisms

Arabidopsis thaliana (13)
Oryza sativa (10)
Mus musculus (10)
Triticum aestivum (3)
Glycine max (3)
Sorghum bicolor (2)
Solanum lycopersicum (2)
Vitis vinifera (2)
Oryza sativa Japonica Group (2)
Cucumis sativus (2)
Homo sapiens (2)
Agriophyllum squarrosum (1)
Neurospora crassa OR74A (1)
Cuminum cyminum (1)
Aphis gossypii (1)
Trichoderma longibrachiatum (1)
Pseudomonas savastanoi pv. savastanoi (1)
Camellia drupifera (1)
Kosakonia cowanii (1)
Thlaspi arvense (1)
Chlamydomonas reinhardtii (1)
Jatropha curcas (1)
Spodoptera litura (1)
Vigna radiata (1)
Cenchrus americanus (1)
Brassica juncea (1)
Pseudomonas putida (1)
Hevea brasiliensis (1)
Oryza sativa Indica Group (1)
Fragaria vesca (1)

Repository

biostudies-arrayexpress (186)
ENA (133)
geo (37)
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pride (16)
EVA (2)
GNPS (2)
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PAXDB (1)

Tissue

Plant cell (5)
Leaf (4)
Root (3)
Cell culture (2)
Saliva (2)
Shoot (2)
Anther (1)
Cell suspension culture (1)
Cotyledon (1)
Early embryonic cell (1)
Embryo (1)
Tuber (1)
Whole body (1)

Disease

Wounds and Injuries (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (14)
Shotgun proteomics (11)
Mass spectrometry assay (3)
NMR spectroscopy (1)
Affinity proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2000 (15)
Liquid Chromatography MS - positive - reverse phase (6)
Q Exactive (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina NovaSeq 6000 (3)
Macrogen (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice (2)
Illumina HiSeq 3000 (2)
Illumina HiSeq 4000 (2)
ISQ (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice/ Thermo Fisher Scientific (1)
Agilent Technologies G2505B scanner (1)
Agilent G2505B (1)
Illumina Genome Analyzer (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
Illumina HiSeq 1000 (1)
NextSeq 500 (1)
BGISEQ-500 (1)
Affymetrix (1)
TSQ Quantum XLS (Thermo Scientific) (1)
GCT Premier (Waters) (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating (1)
Agilent 5975E GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - - - Gas Chromatography MS - (1)
Bruker (1)

Publication Date

2012 (30)
2014 (29)
2015 (25)
2013 (25)
2010 (23)
2026 (22)
2011 (20)
2025 (16)
2021 (11)
2017 (10)
2023 (9)
2016 (8)
2024 (7)
2009 (6)
2020 (5)
2018 (5)
2008 (5)
2022 (3)
2005 (3)
2019 (2)
2006 (1)

UNIPROT ID/AC

1433A_TOBAC (1)
1433B_TOBAC (1)
1433C_TOBAC (1)
1433D_TOBAC (1)
1433E_TOBAC (1)
1433F_TOBAC (1)
1433_TOBAC (1)
4CL1_TOBAC (1)
4CL2_TOBAC (1)
A0A024AXE8_TOBAC (1)
A0A059TCI1_TOBAC (1)
A0A059TCI3_TOBAC (1)
A0A067ZTA7_TOBAC (1)
A0A068JFR6_TOBAC (1)
A0A068LMB8_TOBAC (1)
A0A075EYP9_TOBAC (1)
A0A075EYQ1_TOBAC (1)
A0A075EYQ4_TOBAC (1)
A0A075EYQ6_TOBAC (1)
A0A075F1U0_TOBAC (1)
A0A075F1U5_TOBAC (1)
A0A075F1V2_TOBAC (1)
A0A075F2H1_TOBAC (1)
A0A075F2H4_TOBAC (1)
A0A075F933_TOBAC (1)
A0A075F9G5_TOBAC (1)
A0A075QPA9_TOBAC (1)
A0A076FNG8_TOBAC (1)
A0A076FNH2_TOBAC (1)
A0A076FU21_TOBAC (1)

CHEBI ID

CHEBI:17992 (8)
CHEBI:15428 (8)
CHEBI:15741 (8)
CHEBI:18012 (8)
CHEBI:30769 (8)
CHEBI:17822 (7)
CHEBI:18237 (7)
CHEBI:22653 (7)
CHEBI:18186 (7)
CHEBI:28300 (7)
CHEBI:24898 (7)
CHEBI:25017 (7)
CHEBI:17754 (7)
CHEBI:6650 (7)
CHEBI:28044 (7)
CHEBI:15940 (7)
CHEBI:27266 (7)
CHEBI:16704 (7)
CHEBI:33508 (6)
CHEBI:26271 (6)
CHEBI:25094 (6)
CHEBI:22660 (6)
CHEBI:27570 (6)
CHEBI:16811 (6)
CHEBI:17234 (6)
CHEBI:15676 (6)
CHEBI:16750 (6)
CHEBI:16958 (6)
CHEBI:16610 (6)
CHEBI:28790 (6)

Metabolite Name

Mannitol (4)
Caffeic acid (4)
Adenosine (4)
Sucrose (4)
Lariciresinol 4-O-glucoside (3)
Dehydrophytosphingosine* (3)
Nicotianamine (3)
Digalactosylglycerol* (3)
Galactosylglycerol (3)
1-aminocyclopropanecarboxylic acid (3)
Pheophytin A (3)
Deoxymugineic acid (3)
Pheophorbide A (3)
4-hydroxycinnamate (3)
Vanillate (3)
2-dimethylaminoethanol (3)
Ferulate (3)
Pyroglutamylvaline (3)
Caffeate (3)
Abscisate (3)
3-deoxyoctulosonate (3)
Dopamine (3)
Stachyose (3)
S-carboxymethyl-cysteine (3)
Nicotinate ribonucleoside (3)
Nicotinate (3)
1-methyladenine (3)
Glutathione, reduced (GSH) (3)
Gamma-glutamylcysteine (3)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (3)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2026 (28)
2025 (22)
2024 (19)
2023 (12)
2018 (8)
2014 (8)
2017 (7)
2021 (6)
2022 (5)
2020 (5)
2019 (5)
2016 (3)
2015 (3)
2013 (2)

Classification

bacteria (1)

Study type

Transcription profiling by array (124)
RNA-seq of coding RNA (44)
RNA-seq of non coding RNA (4)
Unknown experiment type (3)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
Cell line - Two-color microarray (1)
Genotyping by array (1)
ChIP-seq (1)

Release Date

2022 (982)
2025 (920)
2023 (873)
2024 (737)
2021 (695)
2020 (568)
2019 (455)
2018 (338)
2017 (286)
2016 (264)
2015 (189)
2014 (151)
2026 (120)
2013 (114)
2012 (89)
2011 (57)
2010 (43)
2009 (22)
2008 (13)
2007 (10)
2006 (8)
2005 (5)
2004 (4)
2003 (3)
2002 (2)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

1Institute of Biomedical Engineering, College of Life Sciences, Qingdao University, Qingdao 266071, P. R. China (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
College of Agronomy, Henan Agricultural University/ National Engineering Research Center for Wheat/ Co-construction State Key Laboratory of Wheat and Maize Crop Science/ Collaborative Innovation Center of Henan Grain Crops (1)
Department of Biological Sciences, University of Alberta, Canada (1)
Department of Crop Protection Faculty of Bioscience Engineering Ghent University Coupure Links 653, 9000 Ghent, Belgium (1)
Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent,Belgium (1)
Department of Plant Bioscience, Pusan National University, 1268-50 Samrangjin-ro, Samnangjin-eup, Miryang, 50463, Korea Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea. (1)
Director, National Research Centre for Banana, Trichy, Tamil Nadu, India (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Research Center of Super Rice Engineering and Technology, Jiangxi Agricultural University. No. 1101 Zhimin Avenue, Economic and Technological Development Zone, Nanchang City, Jiangxi Province (1)
Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education,Research Center of Super Rice Engineering and Technology, Jiangxi Agricultural University, Nanchang 330045, Jiangxi Province, China (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China (1)
State Key Laboratory of Crop Biology, Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong 271018, China (1)
The National Engineering Laboratory of Crop Resistance Breeding, School of Life Sciences, Anhui Agricultural University (1)

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Multitrait engineering of Hassawi red rice for sustainable cultivation

Sustainable agriculture requires locally adapted varieties that produce nutritious food with limited agricultural inputs. Genome engineering represents a viable approach to develop cultivars that fulfill these criteria. For example, the red Hassawi rice, a native landrace of Saudi Arabia, tolerates ...

2023-12-14 | MTBLS864 | MetaboLights

A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production

Comparative transcriptional profiling of N. crassa grown on five major crop straws of China (barley, corn, rice, soybean and wheat straws) revealed a highly overlapping group of 430 genes, the Biomass commonly Induced Core Set (BICS). A large proportion of induced carbohydrate-active-enzyme (CAZy) g...

ORGANISM(S): Neurospora crassa OR74A

2015-01-21 | E-GEOD-60986 | biostudies-arrayexpress

Reducing the use of chemical fertilizers and improving crop salt stress tolerance by acetoin and 2,3-butanediol produced by Bacillus subtilis

Small volatile molecules are considered to play a role in promoting plant growth, with acetoin and 2,3-butanediol being representative examples. In this study, we employed metabolic engineering of Bacillus subtilis to enhance the production of acetoin and 2,3-butanediol, and investigated the...

2025-10-16 | MTBLS13110 | MetaboLights

Comparison of transcriptome profile between wild-type and dst mutant plants

Drought and salinity are two main abiotic-stresses negatively affecting crop growth and productivity worldwide with largely decreasing crop yields. The understanding of plant responses to stresses in physiology, genetics, and molecular biology will be greatly helpful to improve the tolerance of crop...

ORGANISM(S): Oryza sativa Japonica group

2009-07-29 | E-GEOD-11175 | biostudies-arrayexpress

Transport of secondary metabolites in plants: Mechanistic insights and transporter engineering for crop improvement.

Not available

S-EPMC12744758 | biostudies-literature

Can increased leaf photosynthesis be converted into higher crop mass production? A simulation study for rice using the crop model GECROS.

Not available

S-EPMC5447886 | biostudies-literature

One crop breeding cycle from starvation? How engineering crop photosynthesis for rising CO2 and temperature could be one important route to alleviation.

Not available

S-EPMC4810849 | biostudies-literature

Engineering a robust Cas12i3 variant-mediated wheat genome editing system.