Cucurbita - OmicsDI

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Unknown (354)
Genomics (184)
Transcriptomics (16)
Proteomics (7)
Metabolomics (6)

Organisms

Cucurbita pepo (6)
Cucumis melo (4)
Cucurbita maxima (4)
Lagenaria siceraria (2)
Nicotiana tabacum (2)
Solanum lycopersicum (2)
Cucurbita moschata (2)
Cucumis melo subsp. melo (1)
Melon necrotic spot virus (1)
Miscanthus x giganteus (1)
Cycas rumphii (1)
Marsilea quadrifolia (1)
Aristolochia fimbriata (1)
Chara corallina (1)
Silene latifolia (1)
Amborella trichopoda (1)
Nuphar advena (1)
Erythranthe guttata (1)
Musa acuminata (1)
Volvox carteri (1)
Zostera marina (1)
Picea abies (1)
Ginkgo biloba (1)
Gossypium arboreum (1)
Petunia x hybrida (1)
Persea americana (1)
Panicum virgatum (1)
Setaria italica (1)
Citrullus lanatus (1)
Capsicum annuum (1)

Organisms

Cucurbita pepo (19)
Cucurbita maxima (17)
Cucurbita pepo subsp. pepo (16)
Cucurbita moschata (16)
Cucurbita ficifolia (5)
Cucurbita (5)
Cucumis melo (3)
Cucurbita melopepo subsp. texana (2)
endophyte metagenome (2)
rhizosphere metagenome (2)
soil metagenome (2)
Cucumis melo x Cucurbita moschata (1)
Cucumis melo var. makuwa x (Cucurbita mixta x C. moschata) (1)
Eucera pruinosa (1)
Cucurbita melopepo subsp. melopepo (1)
Sphingomonas melonis (1)
Methylobacterium radiotolerans (1)
Pectobacterium brasiliense (1)
Atlantibacter hermannii (1)
leaf metagenome (1)
Ralstonia solanacearum (1)
unidentified (1)

Repository

ENA (180)
biostudies-arrayexpress (11)
geo (8)
MassIVE (3)
MetaboLights (3)
pride (3)
GNPS (2)
EVA (1)
iProX (1)
NODE (1)

Tissue

Leaf (2)
Leaf,flower (1)
Leaf,fruit (1)
Leaf,root (1)
Leaf,seed (1)
Leaf,stem (1)
Leaf,stem,bark (1)
Root (1)
Root,leaf,fruit (1)
Root,stem,leaf (1)
Root,stem,leaf,flower (1)
Root,stem,leaf,fruit (1)
Seed (1)
Stem,leaf (1)
Stem,leaf,flower (1)
Whole plant (1)
Nectar (1)
Nectary (1)

Disease

Mock-inoculated (1)
Monosporascus cannonballus infected (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)

Instrument Platform

Q Exactive Plus (4)
Agilent G2505B scanner (1)
Illumina HiSeq X (1)
- (1)
9030 QTOF MS (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reversed-phase-chromatography (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2023 (5)
2011 (4)
2024 (3)
2012 (3)
2022 (3)
2009 (2)
2021 (2)
2018 (2)
2017 (1)
2014 (1)
2010 (1)
2008 (1)
2020 (1)
2026 (1)

CHEBI ID

CHEBI:50158 (2)
CHEBI:28078 (2)
CHEBI:182979 (1)
CHEBI:182976 (1)
CHEBI:86904 (1)
CHEBI:182258 (1)
CHEBI:182973 (1)
CHEBI:182972 (1)
CHEBI:183019 (1)
CHEBI:160656 (1)
CHEBI:183017 (1)
CHEBI:160800 (1)
CHEBI:166281 (1)
CHEBI:163204 (1)
CHEBI:160635 (1)
CHEBI:183013 (1)
CHEBI:159455 (1)
CHEBI:9577 (1)
CHEBI:183010 (1)
CHEBI:161276 (1)
CHEBI:183004 (1)
CHEBI:163774 (1)
CHEBI:163588 (1)
CHEBI:182999 (1)
CHEBI:182996 (1)
CHEBI:163630 (1)
CHEBI:158110 (1)
CHEBI:158437 (1)
CHEBI:79779 (1)
CHEBI:182993 (1)

Metabolite Name

Asp-Leu-Glu-Asp (1)
PtdIns-(1,2-dihexanoyl) (1)
3-Hydroxy-1-(3-hydroxy-4-methoxyphenyl)-2-{4-[(1E)-3-hydroxy-1-propen-1-yl]-2-methoxyphenoxy}propyl beta-D-glucopyranoside (1)
(2S,3S,9R,13R,14S,16R)-2,16-dihydroxy-17-[(2R)-2-hydroxy-6-methyl-3-oxohept-6-en-2-yl]-4,4,9,13,14-pentamethyl-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,3,7,8,10,12,15,16,17-decahydrocyclopenta[a]phenanthren-11-one (1)
5-Acetylsalicylic acid (1)
2-Cyclohexen-1-one, 4-(3-hydroxy-1-butenyl)-3,5,5-trimethyl- (1)
Behenic alcohol (1)
Phenol, 2,6-dimethoxy-4-(2-propenyl)- (1)
3-Butylisobenzofuran-1(3H)-one (1)
1(3H)-Isobenzofuranone, 3-butylidene- (1)
Phenol, 4-chloro- (1)
Tricyclo[5.4.0.0(2,8)]undec-9-ene, 2,6,6,9-tetramethyl-, (1R,2S,7R,8R)- (1)
Oxacycloheptadec-8-en-2-one, (8Z)- (1)
Acetyl eugenol (1)
Phenol, 4-(2-propenyl)- (1)
N-Decanoic acid (1)
2,6,10-Dodecatrien-1-ol, 3,7,11-trimethyl-, (Z,E)- (1)
9,12-Octadecadienoic acid (Z,Z)- (1)
1H-Pyrrole-2,5-dione, 3-ethyl-4-methyl- (1)
2,6,10-Dodecatrienal, 3,7,11-trimethyl-, (E,E)- (1)
9-Hexadecenoic acid, methyl ester, (Z)- (1)
Methyl hexadec-9-enoate (1)
Hexadecanoic acid, methyl ester (1)
Phenol, 2-methyl-5-(1-methylethyl)- (1)
Benzene, 1,2-dimethoxy-4-(1-propenyl)- (1)
1,3-Benzenediol, 5-pentyl- (1)
Norpipanone (1)
2-Pentadecanone, 6,10,14-trimethyl- (1)
(3R,3aS,6S,7R)-3,6,8,8-Tetramethyloctahydro-1H-3a,7-methanoazulen-6-ol (1)
Butanoic acid, 3-methyl-, 3,7-dimethyl-6-octenyl ester (1)

First Public Date

2024 (32)
2021 (20)
2025 (19)
2023 (19)
2022 (18)
2018 (13)
2026 (12)
2020 (11)
2013 (9)
2017 (7)
2015 (7)
2019 (5)
2016 (5)
2014 (3)

Classification

bacteria (2)

Study type

Transcription profiling by array (4)
RNA-seq of non coding RNA (4)
RNA-seq of coding RNA (2)
Comparative genomic hybridization by array (1)

Release Date

2022 (54)
2021 (38)
2024 (37)
2025 (34)
2023 (33)
2020 (33)
2019 (25)
2018 (23)
2015 (13)
2012 (12)
2017 (9)
2011 (9)
2014 (8)
2016 (8)
2010 (7)
2013 (6)
2009 (4)
2008 (4)
2026 (4)
2002 (3)
2007 (1)

Lab affiliation

Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA (1)
Laboratory of Mycology, Scientific Directorate of Phytopathology, Benaki Phytopathological Institute, 8 St. Delta Street, 14561, Kifissia, Attica, Greece (1)
Max Rubner Institut Kulmbach (1)

Tags

xref:PubMed:28917590 (3)
xref:PubMed:29112324 (2)
pathogen (2)
pathogen:bacterium (2)
xref:PubMed:30630074 (1)
xref:PubMed:36072840 (1)
xref:PubMed:35578183 (1)
xref:PubMed:34308629 (1)
xref:PubMed:20118192 (1)
xref:PubMed:37302255 (1)
xref:PubMed:22823569 (1)

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Small RNA Solexa sequencing of 4 Plant Species in the Cucurbitaceae family

Total RNA was isolated from different tissues (leaf, stem and flesh, rind and placenta of the fruits) using TRIzol reagent and small RNA libraries were generated from four cucurbit species: bottle gourd (Lagenaria siceraria (accession Grif 1617 collection from India)), Cucurbita moschata (accession ...

ORGANISM(S): Lagenaria siceraria

2012-08-02 | E-GEOD-38176 | biostudies-arrayexpress

Cucurbita germplasm

PRJNA263239 | ENA

Cucurbita Genome sequencing

PRJNA1209910 | ENA

Cucurbita Transcriptome or Gene expression

PRJNA464060 | ENA

Cucurbita cultivar:N12 and N15

Cucurbita germplasms Transcriptome

PRJNA265810 | ENA

Cucurbita maxima

Cucurbita maxima Proteome

PRJNA956660 | ENA

Cucurbita ficifolia

cucurbita ficifolia transcriptome sequence reads

PRJNA687925 | ENA

Cucurbita ficifolia

Cucurbita ficifolia Raw sequence reads

PRJNA716427 | ENA

Cucurbita pepo Raw sequence reads

PRJNA1422823 | ENA

Cucurbita moschata

Cucurbita moschata Raw sequence reads

PRJNA1237796 | ENA

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