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TranscriptomicsChromatin immunoprecipitation to identify CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis eggs
Identification of RNA bound to the RNA-binding protein CUGBP1/EDENBP in Xenopus tropicalis eggs.
ORGANISM(S): Xenopus tropicalis 
2008-02-21 | E-MEXP-1466 | biostudies-arrayexpress
ProteomicsEvolutionary Instability of CUG-Leu in the Genetic Code of Budding Yeasts
The standard genetic code is almost universal, and the evolutionary factors that caused a few organisms to deviate from it are poorly understood. We report that three independent changes of the genetic code occurred during the evolution of budding yeasts, each of which was a reassignment of the codo...
ORGANISM(S): Komagataella phaffii Babjeviella inositovora [Candida] boidinii Lipomyces starkeyi Kuraishia capsulata Nakazawaea wickerhamii Peterozyma xylosa Ascoidea rubescens Citeromyces matritensis Pachysolen tannophilus Saturnispora dispora Tortispora caseinolytica Ambrosiozyma philentoma Candida parapsilosis Pichia kudriavzevii Cyberlindnera jadinii Ogataea polymorpha Saccharomycopsis capsularis 
2018-05-21 | PXD008827 | Pride
Genetic code yeast cug 
GenomicsAquiflexum lacus strain:CUG 91378
Aquiflexum sp. CUG 91378T Genome sequencing and assembly
PRJNA631578 | ENA
GenomicsLunatibacter salilacus strain:CUG 91308
Cyclobacteriaceae sp. CUG 91308, whole genome shotgun sequencing project
PRJNA557570 | ENA
GenomicsThalassobacillus sp. CUG 92003
Thalassobacillus sp. CUG 92003 Genome sequencing and assembly
PRJNA632875 | ENA
ProteomicsYeast genetic codes - Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica
While the “universal” genetic code is now known not to be universal, and stop codons can have multiple meanings, one regularity remains, namely that for a given sense codon there is a unique translation. Examining CUG usage in yeasts that have transferred CUG away from leucine, we here report the fi...
ORGANISM(S): Saccharomycopsis fibuligera Ascoidea rubescens DSM 1968 Clavispora lusitaniae ATCC 42720 Babjeviella inositovora NRRL Y-12698 Saccharomycopsis malanga Ascoidea asiatica Nakazawaea peltata 
2018-06-13 | PXD009494 | Pride
Ascoidea Clavispora Saccharomycopsis Nakazawaea Babjeviella 
TranscriptomicsPerturbation of the Akt/Gsk3-beta signaling pathway is common to Drosophila expressing expanded untranslated CAG, CUG and AUUCU repeat RNAs
Recent evidence supports a role for RNA as a common pathogenic agent in both the “polyglutamine” and “untranslated” dominant expanded repeat disorders. One feature of all repeat sequences currently associated with disease is their predicted ability to form a hairpin secondary structure at the RNA...
ORGANISM(S): Drosophila melanogaster 
2011-04-28 | E-GEOD-27178 | biostudies-arrayexpress
TranscriptomicsRNA CLIP-seq for Cugbp1, Mbnl1 and Ptbp1 in mouse C2C12 myoblasts
CUG-binding protein 1 (CUGBP1) and muscleblind-like 1 (MBNL1) are developmentally regulated RNA-binding proteins that are causally associated with myotonic dystrophy type 1. We extensively determined RNA-binding sites of CUGBP1 and MBNL1 to investigate their roles in RNA processing. We also analyzed...
ORGANISM(S): Mus musculus 
2012-01-04 | E-MTAB-414 | biostudies-arrayexpress
ProteomicsPachysolen tannophilus LC-MSMS
The genetic code is the cellular translation table for the conversion of nucleotide sequences into amino acid sequences. Changes to the meaning of sense codons would introduce errors into almost every translated message and are expected to be highly detrimental. However, reassignment of single or mu...
ORGANISM(S): Pachysolen tannophilus NRRL Y-2460 
2016-05-06 | PXD003898 | Pride
Yeast cug codon usage 
ProteomicsCandida albicans CUG codon translation, comparison with other yeasts
Candida yeasts causing human infections are spread across the yeast phylum with Candida glabrata being related to Saccharomyces cerevisiae, Candida krusei grouping to Pichia spp., and Candida albicans, Candida parapsilosis and Candida tropicalis belonging to the CTG-clade. The latter lineage contain...
ORGANISM(S): Candida albicans (Yeast) Candida albicans SC5314 Millerozyma acaciae Candida dubliniensis CD36 Candida tropicalis (Yeast) 
2021-11-17 | PXD027278 | Pride
Candida albicans Candida dubliniensis Candida tropicalis 
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