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TranscriptomicsComparative genomic hybridization of genomic DNA from two B. bronchiseptica strains and one B. pertussis strain and sequenced reference genomes by comparative genome hybridization (CGH)
Genomic DNA from two B. bronchiseptica strains and one B. pertussis strain were compared to the sequenced reference genomes by comparative genome hybridization (CGH).
ORGANISM(S): Bordetella bronchiseptica 
2006-03-31 | E-MEXP-399 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains
Comparative genome hybridization (CGH) of sample of 58 Bordetella bronchiseptica, B. pertussis, and B. parapertussis strains selected to span four clusters as defined by MLST.
ORGANISM(S): Bordetella pertussis 
2005-12-31 | E-TABM-32 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 12 Bordetella holmesii strains compared to Bordetella pertussis
Comparative genome hybridization (CGH) of a sample of 12 Bordetella holmesii strains compared to Bordetella pertussis Tohama I
ORGANISM(S): Bordetella pertussis 
2006-06-30 | E-TABM-55 | biostudies-arrayexpress
TranscriptomicsBordetella pertussis Tohama I iron limitation 1
B. pertussis Tohama I was grown in iron-depleted or iron-replete media and sampled at several time points to assess global gene expression
ORGANISM(S): Bordetella pertussis 
2011-09-08 | E-MEXP-3263 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Bordetella pertussis strains in response to glutamate availablility
B. pertussis mid-log phase cultures were washed twice and resuspended at a starting OD at 600 nm of 0.05 in media containing various concentrations of glutamate.
ORGANISM(S): Bordetella parapertussis 
2006-12-04 | E-TABM-99 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Bordetella pertussis from mid-log phase cultures diluted to two concentrations and grown beyond the log to stationary phase transition to determine growth phase-associated patterns of transcript abundance
B. pertussis mid-log phase cultures were diluted in modified Stainer-Scholte medium to a starting optical density at 600 nm of 0.03 to 0.05, then grown at 37 C with shaking until three hours beyond the log to stationary phase transition.
ORGANISM(S): Bordetella parapertussis 
2006-12-31 | E-TABM-100 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Bordetella pertussis from mid-log phase cultures diluted to two concentrations and sampled at multiple points along the growth curve to determine growth phase-associated patterns of transcript abundance
B. pertussis mid-log phase cultures were diluted in modified Stainer-Scholte medium to a starting optical density at 600 nm of 0.03 to 0.05, then grown at 37 C with shaking until stationary phase. Samples were taken at multiple points along the growth curve.
ORGANISM(S): Bordetella pertussis 
2006-12-31 | E-TABM-101 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Bordetella pertussis GMT-1 nicotinic acid dose curve
B. pertussis GMT-1 and a constitutive Bvg+ phase-locked mutant were grown at 37 degrees C in media containing a range of nicotinic acid concentrations
ORGANISM(S): Bordetella pertussis 
2006-03-31 | E-TABM-29 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of 3 Bordetella bronchiseptica strains plus or minus nicotinic acid
Three B. bronchiseptica strains were grown at 37 degrees C in media containing or lacking nicotinic acid. Samples were harvested at mid-log phase and gene expression difference between the treated and untreated was measured for each strain.
ORGANISM(S): Bordetella bronchiseptica 
2005-12-31 | E-TABM-27 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of B. pertussis chromosomal fragments separated by PFGE
The genomes of Bordetella pertussis strains with different passage histories were digested with a restriction endonuclease and separated by pulsed-field gel electrophoresis (PFGE). Each PFGE fragment was labeled and hybridized to a microarray to assess the genome content of the fragment.
ORGANISM(S): Bordetella pertussis 
2006-04-30 | E-TABM-58 | biostudies-arrayexpress
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