Cvs - OmicsDI

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Unknown (1168)
Transcriptomics (342)
Proteomics (314)
Genomics (146)
Metabolomics (94)
Methylation profiling (7)
Models (2)
Genomic (2)
Other (1)

Organisms

Allexis (273)
Arabidopsis thaliana (273)
Homo sapiens (273)
Listeria monocytogenes (273)
Mus musculus (273)
Rattus norvegicus (273)
Saccharomyces cerevisiae (273)
Schizosaccharomyces pombe (273)
Staphylococcus aureus (273)
Acidithiobacillus ferrooxidans ATCC 53993 (272)
Homo sapiens (271)
Mus musculus (111)
Rattus norvegicus (38)
Solanum tuberosum (5)
Notophthalmus viridescens (2)
Papio hamadryas (2)
Rattus rattus (2)
Spalax carmeli (1)
Nannospalax galili (1)
Oncorhynchus tshawytscha (1)
Canis lupus (1)
Equus caballus (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Danio rerio (1)
Bos indicus (1)
Mesocricetus auratus (1)
Cucumis melo (1)
Escherichia coli (1)

Organisms

Homo sapiens (19)
Mus musculus (16)
Vitis vinifera (3)
plant metagenome (2)
mouse gut metagenome (2)
Solanum tuberosum (2)
Pseudidiomarina insulisalsae (1)
Trifolium (1)
Calanus finmarchicus (1)
Pyrus communis (1)
Prunus mume (1)
Lyssavirus rabies (1)
Hordeum vulgare (1)
Mesocricetus auratus (1)
Cucumis melo (1)
Triticum aestivum (1)
Ipomoea batatas (1)
Hordeum vulgare subsp. vulgare (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (328)
pride (273)
MetaboLights (88)
ENA (75)
EGA (56)
geo (35)
MassIVE (25)
PanoramaPublic (8)
GNPS (6)
iProX (5)
jPOST (3)
BioModels (2)
dbGaP (2)
EVA (2)
GPMDB (1)

Tissue

Cell culture (45)
Blood plasma (18)
Brain (11)
Epithelial cell (10)
Kidney (10)
Colon (9)
Liver (9)
Skeletal muscle (7)
Blood cell (6)
Blood serum (6)
Blood (5)
HeLa cell (5)
Heart (5)
Early embryonic cell (4)
Macrophage (4)
Malignant cell (4)
Permanent cell line cell (4)
Placenta (4)
Stem cell (4)
Whole body (4)
B cell (3)
Hepatocyte (3)
Lung (3)
Plant cell (3)
Breast cancer cell line (2)
Cell suspension culture (2)
Cerebrospinal fluid (2)
Colonic cancer cell line (2)
Embryo (2)
SW-480 cell (2)

Disease

Colon cancer (9)
Disease free (6)
Normal (5)
Breast cancer (5)
Type 2 diabetes mellitus (5)
Alzheimer's disease (3)
Cardiovascular system disease (3)
Malignant neoplasm of ovary (3)
Membranous glomerulonephritis (3)
Obesity (3)
Post-traumatic stress disorder (3)
Acquired metabolic disease (2)
Age related macular degeneration (2)
Cervix carcinoma (2)
Colorectal cancer (2)
Focal segmental glomerulosclerosis (2)
Huntington Disease (2)
Leishmaniasis (2)
Prostate adenocarcinoma (2)
Normal transgenic (transgenic betaARKct) (1)
Hypertension (1)
Not Available (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Alcohol dependence (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Cancer (1)
Cataract (1)
Centronuclear myopathy 5 (1)

Technology Type

Mass Spectrometry (273)
Bottom-up proteomics (100)
Shotgun proteomics (97)
Data-dependent acquisition (69)
Mass spectrometry (61)
Data-independent acquisition (23)
Affinity purification coupled with mass spectrometry proteomics (22)
Mass spectrometry assay (20)
Top-down proteomics (17)
SWATH MS (13)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
SRM/MRM (9)
Gel-based experiment (8)
NMR spectroscopy (7)
Illumina Genome Analyzer II (4)
Illumina HiSeq 2000 (2)
All-ion fragmentation (2)
HDMSE (2)
Illumina 450K array, ILLUMINA, Illumina HiSeq 2000, NextSeq 500 (1)
Illumina Omni 2.5 (1)
Illumina 450k (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Unknown, Affymetrix 500K (1)
Illumina HiSeq 2000, ILLUMINA (1)
DiaPASEF (1)
Glycoproteomics (1)
Immunopeptidomics (1)

Instrument Platform

LTQ Orbitrap Classic (Thermo Scientific) (10)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (6)
NextSeq 500 (6)
Orbitrap Eclipse (6)
Q Exactive (6)
Illumina HiSeq 2000 (4)
Orbitrap Fusion Lumos (4)
NextSeq 2000 (2)
Illumina HiSeq 2500 (2)
- (2)
Q Exactive HF-X (2)
Qiagen-Qiacube (1)
Affymetrix GeneChip(R) HT Scanner (1)
Affymetrix GeneChip Scanner 3000 7G (1)
GenePix Professional 4200A [Axon Instruments] (1)
ScanArray Express HT [PerkinElmer] (1)
Ion Torrent Proton (1)
MinION (1)
NextSeq 550 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
Q Exactive Plus (1)
QTRAP 6500+ (1)
TSQ Quantiva (1)

Publication Date

2025 (112)
2024 (90)
2026 (71)
2013 (51)
2015 (46)
2022 (45)
2014 (44)
2023 (43)
2010 (33)
2021 (31)
2012 (29)
2011 (27)
2016 (26)
2018 (23)
2008 (19)
2020 (18)
2017 (16)
2019 (12)
2009 (11)
2007 (9)
2006 (7)
2005 (3)
2003 (1)

CHEBI ID

CHEBI:30769 (22)
CHEBI:28044 (21)
CHEBI:15891 (21)
CHEBI:16737 (21)
CHEBI:16919 (20)
CHEBI:16811 (19)
CHEBI:6650 (19)
CHEBI:26271 (18)
CHEBI:29016 (18)
CHEBI:16704 (18)
CHEBI:17368 (18)
CHEBI:17126 (17)
CHEBI:26986 (17)
CHEBI:16708 (17)
CHEBI:24898 (17)
CHEBI:15741 (17)
CHEBI:16335 (17)
CHEBI:30915 (17)
CHEBI:27897 (17)
CHEBI:25094 (16)
CHEBI:28300 (16)
CHEBI:17562 (16)
CHEBI:27266 (16)
CHEBI:17822 (15)
CHEBI:22660 (15)
CHEBI:27570 (15)
CHEBI:18186 (15)
CHEBI:17234 (15)
CHEBI:25017 (15)
CHEBI:15428 (15)

Metabolite Name

Creatine (22)
Taurine (20)
Hypoxanthine (19)
Adenine (18)
Uridine (18)
Adenosine (17)
Creatinine (17)
Choline (16)
Carnosine (15)
L-Histidine (15)
L-Phenylalanine (15)
Valine (14)
L-Threonine (14)
Acetylcarnitine (14)
Methionine (14)
Taurocholic acid (14)
Citric acid (14)
Oleamide (14)
Cytosine (14)
Proline (14)
L-Tyrosine (14)
Inosine (14)
Corticosterone (13)
Thymine (13)
Allantoin (13)
Phenylacetylglycine (13)
Cholic acid (13)
Phenylalanine (13)
Cytidine (13)
Xanthine (13)

First Public Date

2014 (14)
2023 (10)
2024 (9)
2026 (8)
2021 (8)
2025 (5)
2017 (5)
2022 (4)
2020 (4)
2019 (3)
2015 (3)
2018 (1)
2016 (1)

Modelling Approach

Agent-based model (1)
Ordinary differential equation model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (10)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (4)
IFOM (4)
Systematic Proteome Research & Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Harvard Medical School (3)
Systematic Proteome Research & Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, 24105 Kiel, Germany (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (2)
CCBIO, Department of Clinical Medicine, Faculty of Medicine, University of Bergen, Bergen, Norway (2)
CECAD Excellence Center & Center for Physiology, Medical Faculty, University of Cologne, Germany (2)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (2)
Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Department of Medicine, Brigham Women's Hospital, Harvard Medical School, Boston, MA, United States (2)
Dana-Farber Cancer Institute and Harvard Medical School (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195 USA (2)
Harvard Medical School Cell Biology Department (2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. (2)
Mass Spectrometry Facility, Max Perutz Labs Vienna, University of Vienna, Vienna Biocenter, Dr.-Bohr-Gasse 7, 1030 Vienna (2)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (2)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (2)
Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad 121001, INDIA. (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Washington University in St. Louis (2)
1 Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany 2 German Cancer Consortium (DKTK), Partner-site Munich and German Cancer Research Center (DKFZ), Heidelberg, Germany 3 Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (1)
1, Westlake Center for Intelligent Proteomics, Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, 310030, China 2, School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, 310030, China 3, Research Center for Industries of the Future, Westlake University, 600 Dunyu Road, Hangzhou, Zhejiang, 310030, China (1)
1-Department of Biochemistry and Molecular Medicine; Université de Montréal; C.P. 6128, Succ. Centre-Ville, Montréal, Québec, H3C 3J7; Canada. 2-Institut de Recherches Cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, Québec, H2W 1R7; Canada. 3-Faculty of Medicine, Division of Experimental Medicine, McGill University, Montréal, Québec, H3A 1A3; Canada. (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)

IsPrivate

False (2)

Classification

viruses (1)

Modification

Not available (1)

Study type

Transcription profiling by array (241)
RNA-seq of coding RNA (27)
Methylation profiling by array (16)
RNA-seq of coding RNA from single cells (8)
RNA-seq of non coding RNA (7)
Transcription profiling by RT-PCR (6)
Methylation profiling by high throughput sequencing (6)
ChIP-seq (4)
ChIP-chip by tiling array (2)
Other (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Bisulfite-seq (1)
Comparative genomic hybridization by array (1)
Hi-C (1)

Release Date

2022 (183)
2023 (152)
2025 (139)
2021 (117)
2024 (113)
2020 (81)
2015 (80)
2013 (75)
2019 (72)
2018 (71)
2017 (64)
2016 (63)
2014 (62)
2011 (45)
2010 (43)
2012 (42)
2008 (24)
2026 (21)
2009 (17)
2007 (15)
2006 (8)
2003 (4)
2005 (3)
2002 (1)
1998 (1)

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Transcriptome analysis induced by CVS infection

PRJNA637598 | ENA

Pseudidiomarina insulisalsae strain:CVS-6

Idiomarina insulisalsae CVS-6 Genome sequencing and assembly

PRJNA420127 | ENA

Optimizing vaccine distribution via mobile clinics: a case study on COVID-19 vaccine distribution to long-term care facilities.

Not available

S-EPMC8710399 | biostudies-literature

Smith2004_CVS_human

This a model from the article: Minimal haemodynamic system model including ventricular interaction and valve dynamics. Smith BW, Chase JG, Nokes RI, Shaw GM, Wake G. Med Eng Phys 2004 Mar;26(2):131-9 15036180 , Abstract: ...

2005-01-01 | MODEL1006230000 | BioModels

Transcriptome analysis induced by CVS infection

In this study, we aimed to adopt the transcriptome sequencing technology to obtain the different changes of transcriptome profiles after infecting with CVS in human neuroblastoma cell line SH-SY5Y. And then, through systematic bioinformatics analysis, we hope to find useful clues for the pathogenesi...

ORGANISM(S): Homo sapiens

2023-06-05 | GSE151892 | GEO

Epigenome analysis of first trimester CVS samples from normal and Trisomy 13,18,21 pregnancies, and maternal whole blood samples.

Genome wide DNA methylation profiling of normal and trisomic placentas, and maternal blood cell DNA. The aim of this study was to search for methylation differences between maternal and fetal(placenta) cell free DNA, and between normal and trisomic placentas for an optimized methylation based noninv...

ORGANISM(S): Homo sapiens

2015-03-31 | GSE66210 | GEO

Array-based DNA-methylation profiling of fetal tissues obtained by routine invasive prenatal testing (chorionic and amniotic samples)

Genome wide DNA methylation profiling of fetal DNA-methylation levels in 47 chorionic villi (CVS) and 16 amniotic cell (AC) samples. The Illumina Infinium 27k Human DNA methylation Beadchip was used to determine DNA methylation profiles across approximately 27,578 CpGs in fetal samples. Bisulphite c...

ORGANISM(S): Homo sapiens

2012-12-14 | E-GEOD-35327 | biostudies-arrayexpress

CVS_16S

CVS 16S sequencing

PRJNA1293934 | ENA

Chorionic villus sampling (CVS) microarray in preeclampsia

4 chorionic villus sampling specimens in pregnancies destined for preeclampsia and 8 matched controls were analyzed 36 genes were differentially expressed using J5 score and prediction modeling in caGEDA computer program Keywords: snap frozen, banked CVS specimens with known pregnancy outcomes revea...

ORGANISM(S): Homo sapiens

2008-11-25 | GSE12767 | GEO

Epigenome analysis of first trimester CVS samples from normal and Trisomy 13,18,21 pregnancies, and maternal whole blood samples.

ORGANISM(S): Homo sapiens

2015-03-31 | E-GEOD-66210 | biostudies-arrayexpress

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