Cysteine proteases

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Unknown (1213)
Proteomics (458)
Transcriptomics (40)
Genomics (28)
Metabolomics (4)
Models (1)

Organisms

Homo sapiens (201)
Mus musculus (85)
Arabidopsis thaliana (22)
Escherichia coli (16)
Saccharomyces cerevisiae (13)
Zea mays (8)
Caenorhabditis elegans (7)
Bos taurus (6)
Severe acute respiratory syndrome coronavirus 2 (6)
Drosophila melanogaster (5)
Nicotiana benthamiana (5)
Rattus norvegicus (5)
Apis mellifera (4)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (4)
Staphylococcus aureus (4)
Entamoeba histolytica (3)
Mycobacterium tuberculosis (2)
Brassica napus (2)
blank sample (2)
Mammalia (1)
Bifidobacterium breve (1)
Clostridium botulinum (1)
Streptococcus pyogenes (1)
Caulobacter vibrioides (1)
Caulobacter vibrioides NA1000 (1)
Glycine max (1)
Magallana gigas (1)
Naja philippinensis (1)
Popeia (1)
Acanthoscurria juruenicola (1)

Organisms

Homo sapiens (5)
Mus musculus (3)
Glycine max (2)
Oryza sativa (2)
Caulobacter vibrioides NA1000 (1)
Porphyromonas gingivalis (1)
Brassica napus (1)
Entamoeba histolytica (1)
Priestia megaterium (1)
Caulobacter vibrioides (1)
Zea mays (1)
Danio rerio (1)

Repository

pride (424)
biostudies-arrayexpress (28)
ENA (26)
MassIVE (20)
geo (16)
jPOST (6)
iProX (5)
MetaboLights (4)
BioModels (1)
PAXDB (1)

Tissue

Cell culture (78)
Epithelial cell (19)
Leaf (18)
Brain (15)
Liver (14)
Plant cell (14)
Permanent cell line cell (13)
Kidney (10)
Macrophage (10)
Blood (9)
Blood cell (8)
Blood plasma (8)
Cell suspension culture (8)
Lung (8)
Whole body (8)
Hepatocyte (7)
Skin (7)
T cell (7)
Colon (6)
Fibroblast (6)
HeLa cell (6)
Saliva (6)
Bone marrow (5)
Heart (5)
JURKAT cell (5)
Rosette (5)
Keratinocyte (4)
Root (4)
Skeletal muscle (4)
Testis (4)

Disease

Disease free (12)
COVID-19 (6)
Colon cancer (6)
Acute leukemia (5)
Breast cancer (5)
Membranous glomerulonephritis (3)
Pancreatic cancer (3)
Sjogren's Syndrome (3)
Amyotrophic lateral sclerosis (2)
Cancer (2)
Meniere's disease (2)
Osteoarthritis (2)
Trypanosomiasis (2)
Tuberculosis (2)
Alport syndrome (1)
Anus cancer (1)
Atherosclerosis (1)
Bacterial pneumonia (1)
Biliary atresia (1)
Cachexia (1)
Cardiovascular system disease (1)
Celiac disease (1)
Cervix carcinoma (1)
Chagas disease (1)
Chronic kidney disease (1)
Chronic myeloid leukemia (1)
Coronavirus infectious disease (1)
Dilatation of the ascending aorta (1)
Lyme disease (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (424)
Shotgun proteomics (273)
Bottom-up proteomics (72)
Data-dependent acquisition (43)
Gel-based experiment (38)
Affinity purification coupled with mass spectrometry proteomics (31)
Data-independent acquisition (26)
SWATH MS (10)
Top-down proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
All-ion fragmentation (3)
SRM/MRM (3)
Mass spectrometry (2)
Mass spectrometry assay (2)
DiaPASEF (2)
HDMSE (2)
Affinity proteomics (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (7)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (2)
TimsTOF Pro (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap XL (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Q Exactive HF (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Q-Exactive (1)
Synapt G2 HDMS (1)
Capillary electrophoresis MS - positive (1)
Liquid Chromatography MS - - - Q Exactive (1)
Liquid Chromatography MS - negative - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2026 (61)
2021 (58)
2024 (54)
2025 (53)
2023 (40)
2018 (38)
2022 (38)
2020 (38)
2019 (37)
2017 (21)
2016 (20)
2014 (12)
2015 (10)
2010 (8)
2011 (3)
2007 (3)
2005 (2)
2012 (2)
2009 (2)
2013 (2)
2008 (1)

UNIPROT ID/AC

2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)
2711.XP_006469071.1 (1)
2711.XP_006469105.1 (1)
2711.XP_006469136.1 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:17154 (2)
CHEBI:17750 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:49033 (2)
CHEBI:7916 (2)
CHEBI:89930 (2)
CHEBI:15422 (1)
CHEBI:105799 (1)
CHEBI:11805 (1)
CHEBI:131434 (1)
CHEBI:132244 (1)
CHEBI:132948 (1)
CHEBI:132983 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133077 (1)
CHEBI:133089 (1)
CHEBI:133094 (1)
CHEBI:133115 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133176 (1)
CHEBI:133181 (1)
CHEBI:133186 (1)
CHEBI:133217 (1)
CHEBI:133221 (1)

Metabolite Name

L-Glutamic acid (2)
L-Histidine (2)
L-Proline (2)
L-Tyrosine (2)
(+)-Ophiobolin A (1)
(+)-Selfotel (1)
(+/-)-1-phenylethanol (1)
(-)-Polygodial (1)
(-)-beta-Caryophyllene epoxide (1)
(8S)-8-Amino-7-oxononanoic acid (1)
(E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate (1)
1,3,7-trimethyl-3,7-dihydro-1H-purine-2,6-dione (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-[(5-Amino-5-carboxypentyl)amino]-1-deoxyfructose (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPA (18:2)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)

First Public Date

2025 (8)
2026 (4)
2024 (4)
2014 (3)
2013 (3)
2023 (2)
2022 (1)
2017 (1)

Lab affiliation

Utrecht University (10)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (6)
Biological Chemistry Department David Geffen School of Medicine UCLA (4)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Dpt. of Immunobiology University of Lausanne (UNIL), Boveresses 155 CH-1066 Epalinges (3)
Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo n. 2, Prague, 166 10, Czech Republic (3)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 D-82152 Martinsried (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (lab head) (2)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (2)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (2)
Department of Immunobiology, University of Lausanne (155 chemin des Boveresses 1066 Epalinges Switzerland) (2)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1 (2)
Department of Pathology and Laboratory Medicine, Mount Sinai Hospital, Suite 6-201, 60 Murray Street, Toronto, Ontario, Canada, M5T 3L9. (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Laboratory of Protein Chemistry and Biochemistry, Institute of Biology, Department of Cell Biology, University of Brasília, Brasília, Brazil (2)
1 Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium 2 Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium (1)
1. Environmental Health Science and Research Bureau, HECSB, Health Canada, Ottawa, ON 2. Interdisciplinary School of Health Sciences, Faculty of Health Sciences, University of Ottawa, Ottawa, ON (1)
1. Laboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, Université de Strasbourg, CNRS, 67000 Strasbourg, France 2. Infrastructure Nationale de Protéomique ProFI – FR2048, 67087 Strasbourg, France (1)
1Department of Food Characterization, Quality and Safety, Institute of Food Science, Technology and Nutrition (ICTAN-CSIC), Madrid, Spain (1)
1Laboratory of Vector-Pathogen Biology, Proteomic Platform, Departmet of Molecular Biology, Université Libre de Bruxelles (1)
AG Proteomics & Bioanalytics Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel 24105 Kiel, Germany (1)
Aging and Muscle Metabolism Lab, Department of Biomedical Sciences & Service of Endocrinology, Diabetes and Metabolism, Faculty of Biology and Medicine, Lausanne University Hospital and University of Lausanne, Bugnon 7, 1005 Lausanne, Switzerland (1)
Agroforestry and Plant Biochemistry, Proteomics and Systems Biology, Department of Biochemistry and Molecular Biology, University of Cordoba, UCO-CeiA3, 14014 Córdoba, Spain (1)
Aix-Marseille univ, CNRS, Inserm, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

protozoa (1)
bacteria (1)

Modification

15.994915 (3)
-17.026549 (2)
0.984016 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
42.010565 (2)
57.021464 (2)
N6-dimethyl-L-lysine (2)
+3amu) (1)
10.008269 (1)
14.01565 (1)
19.989829 (1)
28.0313 (1)
2x(15)N labeled L-lysine (1)
3.994915 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
45.029395 (1)
47.036105 (1)
4x(15)N labeled L-arginine (1)
4x(2)H labeled dimethylated L-lysine (1)
4x(2)H labeled dimethylated residue (1)
58.005479 (1)
6.020129 (1)

Study type

Transcription profiling by array (21)
Unknown experiment type (2)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)

Release Date

2021 (112)
2020 (95)
2022 (94)
2019 (84)
2018 (75)
2024 (70)
2025 (67)
2016 (66)
2023 (62)
2017 (55)
2014 (54)
2012 (51)
2013 (51)
2015 (49)
2010 (43)
2009 (43)
2011 (42)
2008 (23)
2005 (20)
2006 (18)
2007 (13)
2004 (10)
2003 (8)
2001 (8)
2000 (8)
2026 (7)
2002 (7)
1998 (4)
1999 (2)

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Identification of root specific papain-like cysteine proteases in mays

Plant proteases are key regulators of plant cell processes such as seed development, immune responses, senescence and programmed cell death (PCD). Apoplastic papain-like cysteine proteases (PLCPs) are hubs in plant-microbe interactions and play an important role during abiotic stresses. The apoplast...

ORGANISM(S): Zea mays (Maize)

2019-05-27 | PXD013124 | Pride

Profiling Cysteine Proteases Activities in Neuroinflammatory Cells.

Not available

S-EPMC11793851 | biostudies-literature

MSP-MS of Cathepsin L and Cathepsin V pH 5.5

MSP-MS of Cathepsin L and Cathepsin V pH 5.5 at 37C

ORGANISM(S): Synthetic Construct (ncbitaxon:32630)

MSV000088091 | MassIVE

Transcriptome analysis of Mirabilis jalapa

Transcriptome analysis and identification of cysteine proteases in Mirabilis jalapa

PRJEB4458 | ENA

Cysteine Proteases: Modes of Activation and Future Prospects as Pharmacological Targets.

Not available

S-EPMC4842899 | biostudies-literature

1,2,4-Thiadiazolidin-3,5-Diones as Inhibitors of Cysteine Proteases.

Not available

S-EPMC12526058 | biostudies-literature

Microarray analyses of lymph node dendritic cells (DCs) stimulated in vitro with papain or LPS

T helper type 2 (Th2) responses are induced by protease allergens and helminthes. However the molecular mechanisms that initiate Th2 responses are poorly understood. To obtain insight into this mechanism, we performed a microarray analysis of lymph node DCs stimulated in vitro with the protease alle...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-21602 | biostudies-arrayexpress

Unexpected Activity of a Novel Kunitz-type Inhibitor: INHIBITION OF CYSTEINE PROTEASES BUT NOT SERINE PROTEASES.

Not available

S-EPMC5016662 | biostudies-literature

Structure determinants defining the specificity of papain-like cysteine proteases.

Not available

S-EPMC9712828 | biostudies-literature

Inhibition of cysteine proteases in acute and chronic spinal cord injury.

Not available

S-EPMC3101838 | biostudies-literature

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1744 Results

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