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TranscriptomicsTranscription profiling of Arabidopsis thaliana seed compartments at the globular embryo stage.
We collected globular stage seed compartments from 5 or 7-micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments of an Arabidopsis seed containing a globular stage embryo. For the purposes of this study we broke down the seed into 7 c...
ORGANISM(S): Arabidopsis thaliana 
2008-06-11 | E-GEOD-11262 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the heart stage.
We collected heart stage seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing heart stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micropylar e...
ORGANISM(S): Arabidopsis thaliana 
2009-03-21 | E-GEOD-15160 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the pre-globular and linear-cotyledon stages
This SuperSeries is composed of the following subset Series:; GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage. GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage. Experiment Overall Design: Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2008-10-21 | E-GEOD-12404 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the mature green stage.
We collected mature green seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing mature green-stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micr...
ORGANISM(S): Arabidopsis thaliana 
2009-03-21 | E-GEOD-15165 | biostudies-arrayexpress
TranscriptomicsSmall RNA deep sequencing of cellular subcompartments
RNA deep sequencing efforts have revealed abundant expression of small RNAs derived from small nucleolar (sno) RNAs. We employ here spatial RNA deep sequencing to assess the expression of 10-40 nt small RNAs in subcellular compartments of HeLa cells. Total cellular, cytoplasmic, nuclear and nucleola...
ORGANISM(S): Homo sapiens 
2014-05-07 | E-GEOD-50057 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the linear-cotyledon stage
We collected linear-cotyledon stage seed compartments from 5 to 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing linear-coyledon-stage embryos. For the purposes of this study we captured 5 compartments: e...
ORGANISM(S): Arabidopsis thaliana 
2008-10-21 | E-GEOD-12403 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the pre-globular stage
We collected pre-globular stage seed compartments from 7-micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments of seeds containing pre-globular-stage embryos was identified as those seeds containing embryo propers made up of between...
ORGANISM(S): Arabidopsis thaliana 
2008-10-21 | E-GEOD-12402 | biostudies-arrayexpress
ProteomicsThe kinase NEK6 positively regulates LSD1 activity and accumulation in local chromatin sub-compartments (CSCs)
LSD1 is involved in multiple essential roles in mammalian biology and various modes of LSD1 regulation are described ranging from interaction with specific coregulators to distinct post translational modifications. Here we show that NEK6 positively influences LSD1 activity and we observe a strong c...
ORGANISM(S): Escherichia Coli 
2024-10-27 | PXD049227 | JPOST Repository
UnknownComparative proteomic analysis of nuclear and cytoplasmic compartments in human cardiac progenitor cells.
Not available
S-EPMC8742012 | biostudies-literature
UnknownDual Color Sensors for Simultaneous Analysis of Calcium Signal Dynamics in the Nuclear and Cytoplasmic Compartments of Plant Cells.
Not available
S-EPMC5835324 | biostudies-literature
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