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Unknown
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Proteomics
(578)
Genomics
(110)
Transcriptomics
(72)
Metabolomics
(24)
Models
(3)
Other
(2)
Methylation profiling
(1)
Organisms
Schizosaccharomyces pombe
(564)
Oryza sativa Indica Group
(564)
Sinorhizobium meliloti BL225C
(564)
Sus scrofa domesticus
(564)
Saccharomyces cerevisiae
(564)
Staphylococcus aureus
(564)
Rattus norvegicus
(564)
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(564)
Entamoeba histolytica
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Methylohalobius crimeensis 10Ki
(564)
Homo sapiens
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Shigella flexneri
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Allexis
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Mus musculus
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Oryza sativa Japonica Group
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Mus
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Arabidopsis thaliana
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Oryza sativa
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Solanum lycopersicum
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Rattus rattus
(1)
Organisms
Homo sapiens
(42)
Mus musculus
(15)
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(5)
Ovis aries
(3)
Danio rerio
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Sus scrofa
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Canis lupus familiaris
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Nicotiana attenuata
(1)
Bacillus safensis
(1)
Mus
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Brassica napus
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(1)
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(1)
Arabidopsis thaliana
(1)
Repository
pride
(564)
ENA
(96)
geo
(62)
biostudies-arrayexpress
(27)
MetaboLights
(22)
iProX
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GNPS
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Tissue
Cell culture
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(48)
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(44)
Permanent cell line cell
(19)
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(15)
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(14)
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(13)
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(13)
Leaf
(13)
Whole body
(12)
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(11)
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(11)
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(11)
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(8)
Macrophage
(8)
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(8)
Blood
(8)
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(7)
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(7)
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(7)
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(6)
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(6)
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(6)
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(6)
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(5)
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(5)
Disease
Disease free
(20)
Breast cancer
(18)
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(6)
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(5)
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(4)
Type 2 diabetes mellitus
(4)
Wounds and Injuries
(4)
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(4)
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(3)
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(3)
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(3)
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(3)
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(3)
Cardiovascular system disease
(3)
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(3)
Alzheimer's disease
(3)
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(3)
COVID-19
(3)
Temporal lobe epilepsy
(2)
Multiple sclerosis
(2)
Hypertension
(2)
Severe acute respiratory syndrome
(2)
Systemic lupus erythematosus
(2)
Lymphoma
(2)
Pancreatic ductal adenocarcinoma
(2)
Human immunodeficiency virus infectious disease
(2)
Parkinson's disease
(2)
Periodontitis
(2)
Leishmaniasis
(1)
Pre diabetic
(1)
Technology Type
Mass Spectrometry
(564)
Shotgun proteomics
(312)
Bottom-up proteomics
(107)
Affinity purification coupled with mass spectrometry proteomics
(65)
Data-dependent acquisition
(49)
Data-independent acquisition
(29)
SWATH MS
(26)
Top-down proteomics
(26)
Mass spectrometry
(20)
Gel-based experiment
(19)
Chemical cross-linking coupled with mass spectrometry proteomics
(16)
All-ion fragmentation
(9)
MSE
(5)
HDMSE
(4)
Affinity proteomics
(3)
DiaPASEF
(3)
SRM/MRM
(3)
Proteogenomics
(2)
NMR spectroscopy
(1)
Mass spectrometry assay
(1)
SomaScan affinity proteomics
(1)
Mass spectrometry imaging
(1)
Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(6)
Liquid Chromatography Tandem MS (LC-MS/MS)
(2)
Liquid Chromatography MS - Positive (LC-MS (Positive))
(2)
Liquid Chromatography MS - positive - reverse-phase
(2)
Liquid Chromatography MS - negative - reverse-phase
(2)
Impact
(1)
MaXis
(1)
Acquity QDA detector (Waters instrument model)
(1)
ELSD (Buchi ELS C-650)
(1)
Acquity UPLC PDA
(1)
LTQ XL
(1)
LTQ Orbitrap Velos
(1)
Q Exactive
(1)
MS Imaging - Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive
(1)
Thermo Q Exactive (Thermo Scientific)
(1)
Liquid Chromatography MS - alternating - direct infusion
(1)
Atmospheric Pressure Matrix Assisted Laser Desorption/Ionization orbitrap MS - Positive
(1)
LTQ FT Ultra (Thermo Scientific)
(1)
GCMS-QP2010 Plus (Shimadzu)
(1)
Direct infusion MS - negative
(1)
Liquid Chromatography MS - Negative (LC-MS (Negative))
(1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific)
(1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters)
(1)
6490 Triple Quadrupole LC/MS (Agilent)
(1)
6540 Q-TOF LC/MS (Agilent)
(1)
Bruker
(1)
Gas Chromatography MS - positive
(1)
Liquid Chromatography MS - negative - reverse phase
(1)
Publication Date
2022
(103)
2024
(87)
2025
(83)
2023
(81)
2026
(80)
2021
(68)
2020
(59)
2019
(34)
2017
(25)
2018
(24)
2016
(13)
2012
(12)
2014
(7)
2015
(6)
2011
(3)
2013
(2)
2010
(2)
2009
(1)
UNIPROT ID/AC
Q06187
(1)
P08571
(1)
Q99683
(1)
Q8N5C8
(1)
Q07890
(1)
Q12933
(1)
Q15628
(1)
Q13546
(1)
O60603
(1)
P19438
(1)
P01375
(1)
O00443
(1)
P19174
(1)
P36507
(1)
P17252
(1)
Q9Y4K3
(1)
P51617
(1)
Q99836
(1)
P05412
(1)
O43318
(1)
P01100
(1)
P42224
(1)
P19838
(1)
P27361
(1)
P45983
(1)
P01133
(1)
P00533
(1)
P46734
(1)
P04049
(1)
Q13233
(1)
CHEBI ID
CHEBI:72998
(5)
CHEBI:30746
(4)
CHEBI:30769
(4)
CHEBI:6541
(3)
CHEBI:32980
(3)
CHEBI:34698
(3)
CHEBI:6824
(3)
CHEBI:72747
(3)
CHEBI:7575
(3)
CHEBI:8024
(3)
CHEBI:28527
(3)
CHEBI:32389
(3)
CHEBI:134485
(3)
CHEBI:35033
(3)
CHEBI:89605
(3)
CHEBI:75342
(3)
CHEBI:27732
(3)
CHEBI:16870
(3)
CHEBI:16831
(3)
CHEBI:48131
(3)
CHEBI:165591
(3)
CHEBI:17026
(3)
CHEBI:15843
(3)
CHEBI:28621
(3)
CHEBI:44920
(3)
CHEBI:34900
(3)
CHEBI:16566
(3)
CHEBI:59681
(1)
CHEBI:18035
(1)
CHEBI:18348
(1)
Metabolite Name
Azelaic acid
(4)
Nimodipine
(3)
Paracetamol
(3)
Trolox
(3)
Valylvaline
(3)
Linoleic acid
(3)
Sphinganine
(3)
Diphenylamine
(3)
3-Methoxytyramine
(3)
Phthalic acid
(3)
Valine
(3)
N-Acetylvaline
(3)
Phenobarbital
(3)
Triethanolamine
(3)
Phytosphingosine
(3)
Docosanamide
(3)
Sebacic acid
(3)
Dodecanedioic acid
(3)
Caffeine
(3)
Taurine
(3)
4-Hydroxydebrisoquine
(2)
Medrysone
(2)
Atenolol
(2)
5-Hydroxydiclofenac
(2)
Glucuronic acid
(2)
Isocitric acid
(2)
Cer(d18:0/22:0)
(2)
Losartan
(2)
Prolylleucine
(2)
5-Methyluridine
(2)
First Public Date
2024
(15)
2022
(15)
2020
(13)
2019
(9)
2026
(8)
2021
(8)
2023
(7)
2014
(6)
2025
(5)
2016
(4)
2018
(3)
2017
(2)
2015
(1)
Modelling Approach
Logical model
(1)
Ordinary differential equation model
(1)
Lab affiliation
Moffitt Cancer Center Tampa, FL, USA
(5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China
(4)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China
(4)
Shenzhen Center for Disease Control and Prevention
(3)
Agronomy College, Henan Agricultural University, China
(3)
UHN
(3)
Shenzhen People’s Hospital
(3)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, 5 Dong Dan San Tiao, Dongcheng District, Beijing 100005, China.
(3)
Department of Molecular & Clinical Cancer Medicine Institute of Systems, Molecular & Integrative Biology University of Liverpool
(3)
LIST-ERIN-BEAP Bascharage1 Luxembourg
(3)
Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruder Boskovic Institute, Zagreb, Croatia
(3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP)
(2)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw
(2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055.
(2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424
(2)
Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center
(2)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology
(2)
Department of Immunology and Cell Biology, Sherbrooke, QC, Canada
(2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
(2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences
(2)
Institut Cochin, Inserm U 1016, CNRS UMR 8104, Université Paris Cité.
(2)
Wayne State University Chemistry
(2)
Novo Nordisk Foundation CPR, University of Copenhagen
(2)
South China Agricultural University
(2)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences
(2)
Anses Fougères
(2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences
(2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil.
(2)
Department of Molecular Biology and Genetics, Gebze Technical University, 41400, Kocaeli, Turkey
(2)
Lanzhou Veterinary Research Institute
(2)
Tags
xref:PubMed:27942860
(2)
xref:PubMed:36138345
(2)
xref:PubMed:33520437
(2)
xref:PubMed:38835801
(1)
xref:PubMed:33531552
(1)
xref:PubMed:32678444
(1)
xref:PubMed:32795590
(1)
xref:PubMed:38548806
(1)
xref:PubMed:30940071
(1)
xref:PubMed:38814828
(1)
xref:PubMed:31465285
(1)
xref:PubMed:36171861
(1)
xref:PubMed:38722740
(1)
xref:PubMed:37288969
(1)
xref:PubMed:38030186
(1)
xref:PubMed:32970688
(1)
xref:PubMed:32994866
(1)
xref:PubMed:35734179
(1)
xref:PubMed:37783879
(1)
xref:PubMed:35794855
(1)
xref:PubMed:34485379
(1)
xref:PubMed:37426673
(1)
xref:PubMed:24867915
(1)
xref:PubMed:25211130
(1)
xref:PubMed:20427504
(1)
xref:PubMed:22371016
(1)
xref:PubMed:40054344
(1)
xref:PubMed:32308672
(1)
xref:PubMed:37235428
(1)
xref:PubMed:34285833
(1)
IsPrivate
False
(3)
Model Flag
Non Kinetic
(1)
Modification
N6
(1)
N6-dimethyl-L-lysine
(1)
Study type
Transcription profiling by array
(23)
RNA-seq of coding RNA
(2)
Comparative genomic hybridization by array
(1)
Other
(1)
Release Date
2022
(750)
2021
(557)
2023
(517)
2020
(417)
2024
(351)
2025
(334)
2019
(265)
2018
(145)
2017
(95)
2016
(63)
2014
(47)
2015
(45)
2012
(27)
2013
(26)
2026
(25)
2011
(15)
2010
(13)
2009
(9)
2008
(3)
2007
(2)
2006
(1)
2005
(1)
2004
(1)
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Identifier Mapping in Cytoscape.
Not available
S-EPMC6053696
|
biostudies-literature
Cite
Biological network exploration with Cytoscape 3.
Not available
S-EPMC4174321
|
biostudies-literature
Cite
CyAnimator: Simple Animations of Cytoscape Networks.
Not available
S-EPMC4752027
|
biostudies-literature
Cite
Cytoscape Automation: empowering workflow-based network analysis.
Not available
S-EPMC6717989
|
biostudies-literature
Cite
NOA: a cytoscape plugin for network ontology analysis.
Not available
S-EPMC3722524
|
biostudies-literature
Cite
Network propagation in the cytoscape cyberinfrastructure.
Not available
S-EPMC5638226
|
biostudies-literature
Cite
eXamine: Visualizing annotated networks in Cytoscape.
Not available
S-EPMC6013758
|
biostudies-literature
Cite
clusterMaker: a multi-algorithm clustering plugin for Cytoscape.
Not available
S-EPMC3262844
|
biostudies-literature
Cite
GIANT: a cytoscape plugin for modular networks.
Not available
S-EPMC4183485
|
biostudies-literature
Cite
CySBGN: a Cytoscape plug-in to integrate SBGN maps.
Not available
S-EPMC3599859
|
biostudies-literature
Cite
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