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Unknown
(420)
Genomics
(263)
Transcriptomics
(81)
Metabolomics
(68)
Proteomics
(29)
Clinical
(3)
Models
(2)
Methylation profiling
(1)
Organisms
Mus musculus
(53)
Homo sapiens
(23)
Drosophila melanogaster
(9)
Equus caballus
(4)
Xenopus laevis
(2)
Tetranychus urticae
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Bos taurus
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Schizosaccharomyces pombe
(1)
Rattus norvegicus
(1)
Arabidopsis thaliana
(1)
Orpinomyces sp.
(1)
Ruminococcus champanellensis
(1)
Cellulosilyticum ruminicola
(1)
Epidinium ecaudatum
(1)
Butyrivibrio hungatei
(1)
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(1)
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(1)
Bacteroides sp.
(1)
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(1)
Pseudoselenomonas ruminantium
(1)
Xylanibacter ruminicola
(1)
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(1)
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(1)
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(1)
Piromyces sp.
(1)
Ruminococcus sp.
(1)
Lachnospira eligens
(1)
[Eubacterium] cellulosolvens
(1)
Neocallimastix frontalis
(1)
Organisms
Mus musculus
(80)
Homo sapiens
(37)
hot springs metagenome
(31)
soil metagenome
(6)
coal metagenome
(4)
seawater metagenome
(3)
lake water metagenome
(3)
groundwater metagenome
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marine metagenome
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sediment metagenome
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Bos taurus
(3)
Acinetobacter pittii
(2)
salt lake metagenome
(2)
Equus caballus
(2)
Oryza sativa
(2)
Klebsiella pneumoniae
(2)
Brenneria populi subsp. brevivirga
(1)
Herbaspirillum sp. JGI CrystG Apr3-4-D8
(1)
Escherichia coli O157:H7 str. EDL933
(1)
Shigella sp. D8
(1)
Methanosarcina barkeri
(1)
Rhodococcus erythropolis
(1)
Measles morbillivirus
(1)
Bacillus tequilensis
(1)
Acanthurus triostegus
(1)
cold seep metagenome
(1)
mangrove metagenome
(1)
Microbiota
(1)
Sinonovacula constricta
(1)
Mus
(1)
Repository
ENA
(244)
biostudies-arrayexpress
(55)
geo
(44)
MetaboLights
(40)
MetabolomicsWorkbench
(27)
pride
(23)
PeptideAtlas
(4)
BioModels
(2)
EGA
(2)
GNPS
(1)
iProX
(1)
MassIVE
(1)
Tissue
Blood
(11)
Feces
(5)
Epithelial cell
(4)
Cell culture
(3)
Brain
(2)
Lung
(2)
Breast
(2)
Blood plasma
(2)
Milk
(2)
Culture media
(1)
Hypothalamus
(1)
Nucleus accumbens
(1)
Breath
(1)
Plankton
(1)
Kidney
(1)
Bacterial cells
(1)
Cultured cells
(1)
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(1)
Ascites tumor cell
(1)
Brain
(1)
Cardiocyte differentiation
(1)
Embryonic stem cell
(1)
H9c2 cell
(1)
Hepatocyte
(1)
Hippocampus
(1)
Liver
(1)
Lung
(1)
M1 macrophage
(1)
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(1)
Macrophage
(1)
Disease
Ulcerative colitis
(4)
Colorectal Neoplasms
(2)
Influenza
(2)
Normal
(1)
Patients with metastatic ColoRectal Cancer (mCRC)
(1)
Myalgic encephalomyelitis/chronic fatigue syndrome
(1)
Obesity
(1)
Diabetes
(1)
Breast Carcinoma
(1)
Cervix carcinoma
(1)
Cryptococcosis
(1)
Non-small cell lung carcinoma
(1)
Ovarian cancer
(1)
Prostate adenocarcinoma
(1)
Type 2 diabetes mellitus
(1)
Technology Type
Mass Spectrometry
(50)
Mass spectrometry
(28)
ESI
(26)
Shotgun proteomics
(8)
NMR spectroscopy
(7)
Mass spectrometry assay
(6)
Chemical cross-linking coupled with mass spectrometry proteomics
(5)
EI
(4)
Data-independent acquisition
(4)
Bottom-up proteomics
(3)
Data-dependent acquisition
(2)
Top-down proteomics
(2)
Affinity purification coupled with mass spectrometry proteomics
(1)
Gel-based experiment
(1)
Instrument Platform
Liquid Chromatography MS - negative - reverse phase
(11)
Liquid Chromatography MS - positive - reverse phase
(7)
Gas Chromatography MS -
(6)
Nuclear Magnetic Resonance (NMR) -
(5)
NextSeq 500
(4)
Gas Chromatography MS - positive
(3)
Liquid Chromatography MS - alternating - hilic
(3)
Liquid Chromatography MS - negative - hilic
(3)
Liquid Chromatography MS - positive - hilic
(3)
Illumina NovaSeq 6000
(2)
Illumina HiSeq 2000
(2)
Liquid Chromatography MS -
(2)
Exactive (Thermo Scientific)
(2)
Liquid Chromatography MS - positive
(2)
Liquid Chromatography MS - negative - HILIC
(2)
Liquid Chromatography MS - positive - HILIC
(2)
Liquid Chromatography MS - positive - reverse-phase
(2)
Liquid Chromatography MS - negative - reverse-phase
(2)
Illumina HiSeq 4000
(1)
Q Exactive|1001911
(1)
Impact HD UHR-QqTOF-MS
(1)
Liquid Chromatography MS - positive - reversed-phase-c18
(1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating))
(1)
TSQ Vantage (Thermo Scientific)
(1)
Gas Chromatography MS - Positive (GC-MS (Positive))
(1)
Nuclear Magnetic Resonance (NMR)
(1)
Direct infusion MS - negative
(1)
Liquid Chromatography MS - Positive (LC-MS (Positive))
(1)
Direct infusion MS - positive
(1)
Q Exactive
(1)
Publication Date
2025
(20)
2023
(17)
2020
(15)
2012
(12)
2015
(11)
2026
(11)
2024
(9)
2021
(9)
2018
(9)
2016
(9)
2022
(9)
2019
(9)
2014
(6)
2010
(5)
2017
(5)
2013
(4)
2009
(4)
2007
(2)
2005
(2)
2011
(1)
UNIPROT ID/AC
P09560
(2)
Q90W58
(2)
Q05116
(2)
P26696
(2)
A0A024R8H9
(2)
A0A024RAN2
(2)
A0A024RC46
(2)
A0A087WT59
(2)
A0A087WTX5
(2)
A0A087WUD1
(2)
A0A087WVW2
(2)
A0A087WWK8
(2)
A0A087WXI0
(2)
A0A087WYL9
(2)
A0A087WZE9
(2)
A0A087X130
(2)
A0A087X1V9
(2)
A0A0A0MR66
(2)
A0A0A0MS07
(2)
A0A0A0MS51
(2)
A0A0A0MSA7
(2)
A0A0C4DG89
(2)
A0A0C4DGT3
(2)
A0AV96
(2)
A0AVT1
(2)
A0FGR8
(2)
A0FGR8-2
(2)
A0FGR8-6
(2)
A0JLT2
(2)
A0JNW5
(2)
ENSEMBL ID
ENSG00000147251
(2)
ENSG00000170477
(2)
ENSG00000204131
(2)
ENSG00000229353
(2)
ENSG00000176092
(1)
ENSG00000247315
(1)
CHEBI ID
CHEBI:15428
(14)
CHEBI:30769
(13)
CHEBI:18237
(12)
CHEBI:15741
(12)
CHEBI:22660
(11)
CHEBI:27266
(11)
CHEBI:18012
(11)
CHEBI:16449
(11)
CHEBI:15756
(11)
CHEBI:18186
(10)
CHEBI:26986
(10)
CHEBI:25017
(10)
CHEBI:28044
(9)
CHEBI:32816
(9)
CHEBI:27897
(9)
CHEBI:17822
(8)
CHEBI:26271
(8)
CHEBI:25094
(8)
CHEBI:15843
(8)
CHEBI:30915
(8)
CHEBI:48430
(7)
CHEBI:16811
(7)
CHEBI:17234
(7)
CHEBI:24898
(7)
CHEBI:17754
(7)
CHEBI:30776
(7)
CHEBI:28875
(7)
CHEBI:28842
(7)
CHEBI:16196
(7)
CHEBI:78320
(7)
Metabolite Name
Threonine
(5)
Valine
(5)
Palmitic acid
(5)
Trimethylamine N-oxide
(4)
Glycine
(4)
Phenylalanine
(4)
Alanine
(4)
Lactate
(4)
Citric acid
(4)
Citric acid
(4)
Azelaic acid
(4)
Alpha-Terpineol
(3)
Cysteine
(3)
Tryptophan
(3)
Taurine
(3)
Lysine
(3)
Kynurenine
(3)
Glucose
(3)
Choline
(3)
Creatinine
(3)
Leucine
(3)
Succinate
(3)
Glycine
(3)
Putrescine
(3)
Valine
(3)
Benzoic acid
(3)
Stearic acid
(3)
Pyruvic acid
(3)
L-Arginine
(3)
Succinic acid
(3)
First Public Date
2020
(35)
2023
(33)
2025
(28)
2024
(25)
2019
(23)
2021
(20)
2018
(19)
2026
(17)
2014
(11)
2022
(9)
2017
(9)
2016
(8)
2015
(4)
2013
(3)
Modelling Approach
Ordinary differential equation model
(2)
Study status
Terminated
(1)
Recruiting
(1)
Completed
(1)
Lab affiliation
1. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada; 2. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada; 3. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada; 4. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada
(2)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada
(1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea
(1)
Dairy Foods, AgResearch, Ruakura Research Centre
(1)
Department of Biochemistry and Molecular Biology School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA
(1)
Department of Microbiology, Assam down town University, Guwahati-781026, Assam, India.
(1)
EDyP
(1)
Head of Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry
(1)
Laboratory for Systems Theory and Automatic Control, Institute for Automation Engineering (IFAT), Otto-von-Guericke University Magdeburg, 39106 Magdeburg, Germany
(1)
Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland
(1)
Monash Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia
(1)
National Centre for Cell Science, Pune
(1)
Parallel Squared Technology Institute, Watertown, Massachusetts 02472, USA Department of Bioengineering, Northeastern University, Boston, MA 02115, USA
(1)
Professor of Cell Biology & Parasitology Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry & Drug Discovery School of Life Sciences University of Dundee Dundee DD1 5EH United Kingdom
(1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(1)
Seer, Inc.
(1)
TUM School of Natural Sciences, Department Biosciences, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Technical University Munich (TUM), Ernst-Otto-Fischer Str. 8, Garching, 85748, Germany
(1)
Unité de recherche Mycologie Moléculaire, Institut Pasteur, 28 rue du Docteur Roux 75015 Paris
(1)
University of Idaho
(1)
University of Namur - Narilis - URBC 61 rue de Bruxelles 5000 Namur Belgium
(1)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(1)
Utrecht University, Biomolecular Mass Spectrometry and Proteomics
(1)
Tags
pathogen
(7)
pathogen:bacterium
(6)
xref:PubMed:37460697
(5)
xref:PubMed:37315534
(3)
xref:PubMed:27133794
(3)
xref:PubMed:40950209
(3)
xref:PubMed:39804040
(3)
xref:PubMed:37146079
(2)
xref:PubMed:16166195
(2)
xref:PubMed:37061916
(2)
xref:PubMed:32917699
(2)
xref:PubMed:37709822
(2)
xref:PubMed:40997306
(2)
xref:PubMed:37250773
(1)
xref:PubMed:37012455
(1)
xref:PubMed:35895872
(1)
xref:PubMed:35911733
(1)
xref:PubMed:34409288
(1)
xref:PubMed:31844130
(1)
xref:PubMed:34694888
(1)
xref:PubMed:37250328
(1)
xref:PubMed:40425941
(1)
xref:PubMed:33264613
(1)
xref:PubMed:30772174
(1)
xref:PubMed:29739334
(1)
xref:PubMed:30842630
(1)
xref:PubMed:30444718
(1)
xref:PubMed:23995758
(1)
xref:PubMed:24360955
(1)
xref:PubMed:22796965
(1)
Keyword
Trifluridine/tipiracil
(1)
BO-112
(1)
Pembrolizumab
(1)
Trifluridine
(1)
IsPrivate
False
(2)
Classification
bacteria
(6)
viruses
(1)
Modification
4x(2)H labeled dimethylated residue
(1)
Study type
Transcription profiling by array
(27)
RNA-seq of coding RNA
(8)
RNA-seq of non coding RNA
(6)
ChIP-seq
(5)
ChIP-chip by tiling array
(4)
Interventional
(3)
Single nucleus RNA sequencing
(1)
DNA-seq
(1)
Methylation profiling by array
(1)
RNA-seq of coding RNA from single cells
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2022
(53)
2025
(49)
2023
(48)
2024
(46)
2021
(32)
2019
(32)
2020
(31)
2018
(27)
2016
(26)
2015
(25)
2014
(20)
2012
(16)
2017
(16)
2013
(13)
2010
(9)
2009
(7)
2011
(5)
2007
(5)
2026
(3)
2008
(3)
2006
(2)
2005
(2)
2003
(1)
2002
(1)
2001
(1)
2000
(1)
1998
(1)
Location
India
(1)
Ukraine
(1)
Peru
(1)
Argentina
(1)
Russia
(1)
Spain
(1)
Italy
(1)
Belgium
(1)
Brazil
(1)
China
(1)
Germany
(1)
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Shigella sp. D8 strain:D8
Reference genome for the Human Microbiome Project
PRJNA32505
|
ENA
Cite
Acinetobacter pittii strain:Ap-D8
Acinetobacter pittii strain:Ap-D8 Genome sequencing and assembly
PRJNA437362
|
ENA
Cite
Measles morbillivirus strain:D8
Measles morbillivirus strain:D8 Genome sequencing
PRJNA480551
|
ENA
Cite
Klebsiella pneumoniae strain:D8
Klebsiella pneumoniae strain:D8 Genome sequencing
PRJNA340155
|
ENA
Cite
Escherichia coli strain:D8
Escherichia coli strain:D8 Genome sequencing and assembly
PRJNA1006151
|
ENA
Cite
Brassica rapa strain:S7 D8 | cultivar:FPsc S7 D8
Brassica rapa FPsc S7 D8 Resequencing genome sequencing
PRJNA334059
|
ENA
Cite
Herbaspirillum sp. JGI CrystG Apr3-4-D8
Herbaspirillum sp. JGI CrystG Apr3-4-D8 Genome sequencing
PRJNA340644
|
ENA
Cite
Acinetobacter pittii strain:AP-D8
Acinetobacter pittii strain:AP-D8 Genome sequencing and assembly
PRJNA434774
|
ENA
Cite
Murine anti-vaccinia virus D8 antibodies target different epitopes and differ in their ability to block D8 binding to CS-E.
Not available
S-EPMC4256255
|
biostudies-literature
Cite
Rhodococcus erythropolis strain:PFA D8-1
Rhodococcus erythropolis strain:PFA D8-1 Genome sequencing and assembly
PRJNA884193
|
ENA
Cite
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