Dai Liang L - OmicsDI

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Unknown (606)
Transcriptomics (102)
Proteomics (22)
Metabolomics (6)
Genomics (4)

Organisms

Homo sapiens (53)
Mus musculus (41)
Arabidopsis thaliana (11)
Escherichia coli K-12 (4)
Rattus norvegicus (4)
Escherichia coli (3)
Candida tropicalis MYA-3404 (1)
Populus x canadensis (1)
Arachis hypogaea (1)
Bombyx mori (1)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Medicago truncatula (1)
Triticum aestivum (1)
Saccharomyces cerevisiae (1)
Aerodramus hirundinaceus (1)
Brassica napus (1)
Oryza sativa (1)
Pseudomonas aeruginosa PAO1 (1)
Ruegeria sp. JZ08IS16 (1)

Repository

biostudies-arrayexpress (106)
iProX (11)
pride (8)
MetaboLights (4)
jPOST (3)
GNPS (2)

Tissue

Cell culture (2)
Liver (2)
Macrophage (2)
Blood plasma (1)
HCT-116 cell (1)
Pleura (1)

Disease

ARR7ox-4-11 (1)
ARR1-SRDX (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (3)
Bottom-up proteomics (2)
Shotgun proteomics (2)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
BAS-5000 [FUJIFILM] (1)
Scanning hardware (1)
LTQ FT (1)
MaXis (1)
MicrOTOF-Q II (1)
Q Exactive (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2013 (29)
2014 (18)
2015 (14)
2011 (11)
2010 (11)
2009 (6)
2023 (6)
2024 (5)
2016 (5)
2012 (5)
2022 (5)
2008 (4)
2026 (3)
2021 (3)
2006 (2)
2025 (2)
2018 (2)
2007 (1)
2020 (1)
2019 (1)

CHEBI ID

CHEBI:15355 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:16704 (2)
CHEBI:16811 (2)
CHEBI:16828 (2)
CHEBI:17351 (2)
CHEBI:17596 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)
CHEBI:27897 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:37024 (2)
CHEBI:65136 (2)
CHEBI:6650 (2)
CHEBI: (1)
CHEBI: 28364 (1)
CHEBI:10002 (1)
CHEBI:10022 (1)
CHEBI:10037 (1)
CHEBI:10070 (1)
CHEBI:10072 (1)
CHEBI:10106 (1)
CHEBI:101064 (1)
CHEBI:10138 (1)
CHEBI:10432 (1)
CHEBI:10577 (1)
CHEBI:10607 (1)
CHEBI:107634 (1)

Metabolite Name

2-aminoadipic acid (2)
Inosine (2)
Isoleucine (2)
Methionine (2)
(+)-(s)-carvone (1)
(+)-ar-turmerone (1)
(+)-catechin (hydrate) (1)
(+/-)-c75 (1)
(+/-)-cannabichromeorcin (1)
(+/-)-cp 47,497-c7-hydroxy metabolite (1)
(-)-a-pinene (1)
(-)-camphanic acid (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(-)-epigallocatechin (1)
(-)-gallocatechin (1)
(-)-isopulegol (1)
(-)-pentazocine (1)
(-)-syringaresinol di-o-glucoside (1)
(1ar,2s,5s,6r,7r,7as)-5-methyl-1a-(3-methyl-2-buten-1-yl)-1a,3,5,6,7,7a-hexahydro-2h-oxireno[g]isochromene-2,6,7-triol (1)
(1r,3r,8s,10r,13s,16s,17r)-6,12,17-trihydroxy-16-methyl-8-(2-methyl-2-propanyl)-2,4,14,19-tetraoxahexacyclo[8.7.2.01,11 03,7 07,11 013,17]nonadecane-5,15,18-trione (1)
(1r,9r)-5-cyclohexyl-11-(propylsulfonyl)-7,11-diazatricyclo[7.3.1.02,7]trideca-2,4-dien-6-one (1)
(2e,4ar,6r,7s,8e,10r)-10-acetoxy-4a-hydroxy-1,1,3,6,9-pentamethyl-4-oxo-1a,4,4a,5,6,7,7a,10,11,11a-decahydro-1h-cyclopenta[a]cyclopropa[f][11]annulen-7-yl benzoate (1)
(2s,3s)-3,5,7-trihydroxy-6-methyl-2-(3,4,5-trihydroxyphenyl)-2,3-dihydro-4h-chromen-4-one (1)
(3ar,4s,6r,11ar)-6,9-dihydroxy-6,10-dimethyl-3-methylene-2,7-dioxo-2,3,3a,4,5,6,7,8,9,11a-decahydrocyclodeca[b]furan-4-yl methacrylate (1)
(3as,10ar,10br)-6,10a-dimethyl-3-methylene-3,3a,4,5,7,8,10a,10b-octahydrofuro[3',2':6,7]cyclohepta[1,2-b]pyran-2,9-dione (1)
(3e,12e)-3,12-dimethyl-8-methylene-6,18-dioxatricyclo[14.2.1.05,9]nonadeca-3,12,16(19)-triene-7,17-dione (1)
(4e)-1,7-bis(4-hydroxyphenyl)-4-hepten-3-one (1)
(5r,6s)-5-hydroxy-4-methoxy-6-(2-phenylethyl)-5,6-dihydro-2h-pyran-2-one (1)
(7r,8s)-7,8-dihydroxy-3,7-dimethyl-6-oxo-7,8-dihydro-6h-isochromene-5-carbaldehyde (1)

Study type

Transcription profiling by array (84)
RNA-seq of coding RNA (6)
Methylation profiling by array (5)
Other (3)
ChIP-seq (3)
Unknown experiment type (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (111)
2023 (100)
2022 (85)
2024 (73)
2021 (68)
2013 (35)
2020 (31)
2015 (28)
2014 (28)
2019 (25)
2018 (24)
2016 (21)
2017 (16)
2010 (15)
2026 (13)
2012 (11)
2011 (11)
2009 (7)
2008 (4)
2007 (2)
2006 (2)
2003 (1)
2001 (1)

Lab affiliation

1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (1)
Director, Simon F.S. Li Marine Science Laboratory, CUHK, Hong Kong Associate Professor, School of Life Sciences, CUHK, Hong Kong (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University (1)
Huazhong University of Science and Technology (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Westlake University (1)

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The acetylome regulators Hdac1 and Hdac2 differently modulate intestinal epithelial cell dependent homeostatic responses in experimental colitis

Histone deacetylases (Hdac) remove acetyl groups from proteins, influencing global and specific gene expression. Hdacs control inflammation, as shown by Hdac inhibitor-dependent protection from DSS-induced murine colitis. While tissue-specific Hdac knockouts show redundant and specific functions, li...

ORGANISM(S): Mus musculus

2014-02-08 | E-GEOD-54785 | biostudies-arrayexpress

Effect of human DAI expressed by an oncolytic vaccinia virus on the gene expression of tumor cells (HS294T) and monocytes (THP-1).

Human melanoma tumor cells (HS294T) and monocytes (THP-1) were infected with a double deleted (-VGF, -TK) oncolytic vaccinia virus expressing human DAI (DNA-dependent activator of interferon-regulatory factors). Total RNA was collected and gene expresson profiles were determined with Agilent microar...

ORGANISM(S): Homo sapiens

2016-03-01 | E-GEOD-76208 | biostudies-arrayexpress

Transcription profiling of rice in relation to infection with rice tungro spherical virus (RTSV)

Near-isogenic lines TW16-4 and TW16-69 were developed from the cross between TN1 (recurrent parent susceptible to RTSV) and Utri Merah (donor parent resistant to RTSV). TW16-4 is susceptible to RTSV, whereas TW16-69 is resistant to RTSV based on a serolog. Experiment Overall Design: Comparison betwe...

ORGANISM(S): Oryza sativa Indica Group

2009-09-04 | E-GEOD-14606 | biostudies-arrayexpress

Determination of Phenolic Acids Using Ultra-High-Performance Liquid Chromatography Coupled with Triple Quadrupole (UHPLC-QqQ) in Fruiting Bodies of Sanghuangporus baumii (Pilat) L.W. Zhou and Y.C. Dai.

Not available

S-EPMC10609702 | biostudies-literature

Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis

Many of duplicated genes are enriched in signaling pathways. Recently, gene duplication of kinases has been shown to provide genetic buffering and functional diversification in cellular signaling. Transcription factors (TFs) are also often duplicated. However, how duplication of TFs affects their re...

ORGANISM(S): Arabidopsis thaliana

2015-02-03 | E-GEOD-62597 | biostudies-arrayexpress

Single cell transcriptome analysis of Arabidopsis roots inoculated by Plasmodiophora brassicae indicates a role for brassinosteroids in clubroot formation.

The clubroot disease caused by the obligate biotrophic protist Plasmodiophora brassicae on host plants of the Brassicaceae family is characterized by enhanced cell division and cell expansion. Since a typical root section of an infected plant always includes different stages of the pathogen as well ...

ORGANISM(S): Arabidopsis thaliana

2014-02-23 | E-GEOD-44676 | biostudies-arrayexpress

Expression data from sorted control and Pygo2-null mouse mammary stem/basal cells

Skin-mammary specific knockout (SSKO) of Pygo2 (K14-cre; Pygo2 flox/-) , a WNT signaling co-activator, results in defective mouse mammary gland development. The FACS sorted mammary stem cell (MaSC)/basal population from Pygo2 SSKO mammary gland displays biased differentiation towards luminal/alveola...

ORGANISM(S): Mus musculus

2013-09-05 | E-GEOD-45826 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Col-0 wild-type and 35S:ARR1-SRDX transgenic seedlings either induced with 6-Benzyladenine or mock-treated

6 days old Arabidopsis thaliana of Col-0 wild-type and 35S:ARR1-SRDX transgenic seedlings grown in liquid culture (1/2 MS, 1 g/L sucrose, 0.5 g/L MES, pH 5.7) were induced with either 5 µM 6-Benzyladenine (a cytokinin analog) for 15 or 120 min, or mock-treated 120 min as a control. These samples wer...

ORGANISM(S): Arabidopsis thaliana

2008-07-03 | E-ATMX-11 | biostudies-arrayexpress

Global gene expression analysis of FHB disease spreading mechanism in wheat

The Fusarium graminearum is responsible for Fusarium head blight (FHB) disease in wheat which makes unsuitable for end-use quality of wheat. For that reason several studies have been aiming to develop FHB resistant cultivars. In order to clarify possible wheat response mechanism, global gene express...

ORGANISM(S): Triticum aestivum

2015-01-30 | E-GEOD-59721 | biostudies-arrayexpress

Metabolic reprogramming of stromal fibroblasts through p62-mTORC1 signaling promotes inflammation and tumorigenesis

The tumor microenvironment plays a critical role in cancer progression, but the precise mechanisms by which stromal cells influence the tumor epithelium are poorly understood. The signaling adapter p62 has been implicated as a positive regulator of epithelial tumorigenesis; however, its role in the ...

ORGANISM(S): Mus musculus

2014-07-23 | E-GEOD-55587 | biostudies-arrayexpress

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