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GenomicsFIREWACh: High-throughput Functional Detection of Transcriptional Regulatory Modules in Mammalian Cells
We report a new method called FIREWACh (Functional Identification of Regulatory Elements Within Accessible Chromatin), a high-throughput functional assay for directly identifying active promoter and enhancer elements. FIREWACh simultaneously assessed over 80,000 DNA fragments derived from M-bM-^@M-^...
ORGANISM(S): Mus musculus 
2014-03-22 | E-GEOD-54863 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse F9 embryonal carcinoma cell line
Expression profile for undifferentiated F9 Embryonal Carcinoma cell line Experiment Overall Design: 3 replicates of RNA derived from undifferentiated F9 cells
ORGANISM(S): Mus musculus 
2008-04-07 | E-GEOD-10606 | biostudies-arrayexpress
GenomicsComparative FAIRE-seq analysis reveals distinguishing features of the chromatin structure of ground state- and primed pluripotent cells
We utilized FAIRE-seq to identify accesible chromatin in mouse embryonic-, epiblast-, and neural- stem cells in addition to mouse embryonic fibroblasts. Analysis of these data sets reveal cell type specific chromatin signatures that differentiate naïve and primed pluripotency. Functional analysis of...
ORGANISM(S): Mus musculus 
2015-01-01 | E-GEOD-58520 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human airway epithelial cells sampled at multiple time points to examine mucociliary differentiation
Microarray analysis was performed to identify transcriptional changes that occur during mucociliary differentiation of human primary bronchial epithelial cells cultured at an air-liquid interface (ALI). Experiment Overall Design: Cells from three different donors were cultured and collected at 11 di...
ORGANISM(S): Homo sapiens 
2007-11-11 | E-GEOD-5264 | biostudies-arrayexpress
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