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ProteomicsMaxQuant DIA Complete submission
Reanalysis of submission PXD005573 using MaxQuant-DIA and MaxQuant. First complete submission in mzTab for Data independent adquisition.
ORGANISM(S): Homo sapiens (Human) 
2020-08-07 | PXD020776 | Pride
Maxquant Data independent adquisition 
TranscriptomicsA Prognostic Gene Expression Index in Ovarian Cancer
Ovarian carcinoma has the highest mortality rate among gynecological malignancies. In this project, we investigated the hypothesis that molecular markers are able to predict outcome of ovarian cancer independently of classical clinical predictors, and that these molecular markers can be validated us...
ORGANISM(S): Homo sapiens 
2009-02-09 | E-GEOD-14764 | biostudies-arrayexpress
TranscriptomicsMIWI catalysis is required for piRNA amplification-independent LINE1 transposon silencing
This SuperSeries is composed of the following subset Series: GSE32180: MIWI catalysis is required for piRNA amplification-independent LINE1 transposon silencing [microarray] GSE32184: MIWI catalysis is required for piRNA amplification-independent LINE1 transposon silencing [deep sequencing] Refer to...
ORGANISM(S): Mus musculus 
2011-11-30 | E-GEOD-32183 | biostudies-arrayexpress
TranscriptomicsExpression data from breast cancer cell lines with various colony-forming ability
Cultured cancer cells exhibit substantial phenotypic heterogeneity when measured in a variety of ways such as sensitivity to drugs or the capacity to grow under various conditions. Among these, the ability to exhibit anchorage-independent cell growth (colony forming capacity in semisolid media), ha...
ORGANISM(S): Homo sapiens 
2009-04-10 | E-GEOD-15026 | biostudies-arrayexpress
TranscriptomicsThe Aryl Hydrocarbon Receptor Regulates Tissue-Specific Dioxin-Dependent and Dioxin-Independent Gene Batteries
This SuperSeries is composed of the following subset Series: GSE15857: The Aryl Hydrocarbon Receptor Regulates Tissue-Specific Dioxin-Dependent and Dioxin-Independent Gene Batteries: Kidney GSE15858: The Aryl Hydrocarbon Receptor Regulates Tissue-Specific Dioxin-Dependent and Dioxin-Independent Gene...
ORGANISM(S): Mus musculus 
2010-05-05 | E-GEOD-15859 | biostudies-arrayexpress
TranscriptomicsSTAT1 independent control of a neurotropic measles virus challenge in primary neurons and infected mice
The objective of this study was to compare the ability of mice that lack STAT1 to resolve a neurotropic viral challenge, and to assess the ability of neurons obtained from these mice to be effectively cleared of virus by interferon gamma For the array, primary neurons were isolated from embryonic mi...
ORGANISM(S): Mus musculus 
2012-03-14 | E-GEOD-33057 | biostudies-arrayexpress
TranscriptomicsInterleukin-27 is a potent inhibitor of cis HIV-1 replication in Monocyte-derived Dendritic Cells via a Type I Interferon-independent pathway
IL-27 treated DCs were shown to be highly potent inhibitors of cis HIV-1, particularly of CCR5 tropic strains. Microarray studies of IL-27 treated DCs showed no up-regulation of Type I (IFN) gene expression. Neutralization of the Type-I IFN receptor had no impact on the HIV inhibition. Lastly, IL-27...
ORGANISM(S): Homo sapiens 
2013-03-29 | E-GEOD-44732 | biostudies-arrayexpress
TranscriptomicsDynamics of replication-independent histone turnover in budding yeast
This SuperSeries is composed of the following subset Series: GSE6664: Ratios for unsync cells GSE6665: Ratios for G1 arrested cells (Printed array) GSE6666: Ratios for G1 arrested cells (Agilent array) GSE6667: PolII occupancy GSE6668: Nucleosome occupancy GSE6669: H3 occupancy GSE6670: Ratios for H...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-11 | E-GEOD-6680 | biostudies-arrayexpress
TranscriptomicsUTX regulated genes in mouse embryonic stem cells
UTX gene is localized on the X chromosome, identified as a demethylase on histone H3 lysine 27. Two independent UTX conditional knockout (cKO) embryonic stem cell lines and two UTX knockout (KO) cell lines were cultured on 0.1% gelatin-coated dishes without feeder cells at desity of 1 million cells/...
ORGANISM(S): Mus musculus 
2012-09-04 | E-GEOD-35415 | biostudies-arrayexpress
TranscriptomicsRNA validation of LAB 2k v2
To study their metabolic potential in natural ecosystems, we developed a species-independent LAB microarray, containing 2,269 30-mer oligonucleotides, and targeting 406 genes that play a key role in the production of sugar catabolites, bacteriocins, exopolysaccharides, and aromas, in probiotic and b...
ORGANISM(S): Lactobacillus pontis 
2010-06-21 | E-GEOD-9140 | biostudies-arrayexpress
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