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TranscriptomicsTranscription profiling of human colorectal carcinoma-derived cell lines, p53 -/-, +/-, +/+ at 0 and 12 hrs after growth arrest
Human colorectal carcinoma-derived cell lines, p53 -/-, +/-, +/+ at 0 and 12 hrs after growth arrest.
ORGANISM(S): Homo sapiens 
2007-09-28 | E-GEOD-90 | biostudies-arrayexpress
TranscriptomicsExpression data from human GBMs
Analysis of human glioblastoma multiforme tumors revealed genes that are upregulated in tumors expressing EGFRvIII compared to those expressing wild-type EGFR We examined gene expression in 52 primary GBM tumors, which were stratified based on the presence or absence of EGFRvIII expression using EGF...
ORGANISM(S): Homo sapiens 
2015-09-08 | E-GEOD-51062 | biostudies-arrayexpress
GenomicsAlternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development
Mammalian development is an intricate process regulated by multiple gene isoforms and their epigenetic states, which are yet undefined. Using integrative massive parallel sequencing and bioinformatics approach, we built genome-wide inventory of transcript variants, their promoters and histone modifi...
ORGANISM(S): Mus musculus 
2011-06-07 | E-GEOD-23525 | biostudies-arrayexpress
GenomicsGenome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq
We report active promoters in five adult mouse tissues - brain, kidney, liver, lung and spleen using ChIP-Seq aganist RNAP-II antibody. We identified 38,639 active RNAP-II transcribed promoters, including 12,270 novel promoters. Of these, 6384 promoters are tissue specific which are CpG poor and con...
ORGANISM(S): Mus musculus 
2010-09-07 | E-GEOD-21773 | biostudies-arrayexpress
GenomicsIdentification of Host-Chromosome Binding Sites and Candidate Gene Targets for KSHV LANA
LANA is essential for tethering the KSHV genome to metaphase chromosomes and for modulating host-cell gene expression, but the binding sites in the host-chromosome remain unknown. Here, we use LANA-specific chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-Seq) to identify ...
ORGANISM(S): Homo sapiens 
2012-01-06 | E-GEOD-34890 | biostudies-arrayexpress
Genomicsena-DATASET-SGL-15-10-2012-16:36:28:919-5 - samples
This dataset contain the raw files generated for SAIF genome project
EGAD00001000254 | EGA
Genomicsena-DATASET-SGL-04-10-2012-02:36:03:619-3 - samples
This is the bam file generated after alignment using BWA program for the SAIF genome
EGAD00001000249 | EGA
GenomicsSequencing and analysis of a South Asian-Indian personal genome
India with over 1.3 billion people is estimated to carry three times more genetic diversity compared to Europe. Next-generation sequencing technologies have facilitated the understanding of diversity by enabling whole genome sequencing at greater speed and lower cost. While multiple genomes from p...
EGAS00001000328 | EGA
GenomicsSGDAC- SciGenom Data Access Committee
Data Access Committee EGAC00001000077
EGAC00001000077 | EGA
TranscriptomicsAnalysis of impact of a novel RNA gene named Papillary Thyroid Carcinoma Susceptibility 3 (PTCSC3) on gene expression in papillary thyroid carcinoma cell line cells (TPC-1)
Genome-wide gene expression analysis in TPC-1 cells transfected with and without expression construct for PTCSC3 . TPC-1 cells were transiently transfected in quadruplicate with an empty vector (pcDNA3) and with the expression vector harboring cDNA for PTCSC3. After 24 hours from transfection total ...
ORGANISM(S): Homo sapiens 
2012-04-30 | E-GEOD-32195 | biostudies-arrayexpress
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