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TranscriptomicsTranscription profiling of human enosynovial giant-cell tumor (TGCT) and pigmented villonodular synovitis (PVNS) samples
Tenosynovial giant-cell tumor (TGCT) and pigmented villonodular synovitis (PVNS) are related conditions with features of both reactive inflammatory disorders and clonal neoplastic proliferations. Chromosomal translocations involving chromosome 1p13 have been reported in both TGCT and PVNS. We confir...
ORGANISM(S): Homo sapiens 
2006-06-09 | E-SMDB-3598 | biostudies-arrayexpress
TranscriptomicsTenosynovial giant-cell tumor and pigmented villonodular synovitis
Tenosynovial giant-cell tumor (TGCT) and pigmented villonodular synovitis (PVNS) are related conditions with features of both reactive inflammatory disorders and clonal neoplastic proliferations. Chromosomal translocations involving chromosome 1p13 have been reported in both TGCT and PVNS. We confir...
ORGANISM(S): Homo sapiens 
2006-02-24 | E-GEOD-4166 | biostudies-arrayexpress
TranscriptomicsAnalysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation
Artificial transcription factors (ATFs) and genomic nucleases based on a DNA binding platform consist- ing of multiple zinc finger domains are currently be- ing developed for clinical applications. However, no genome-wide investigations into their binding speci- ficity have been performed. We have c...
ORGANISM(S): Homo sapiens 
2014-08-01 | E-GEOD-59980 | biostudies-arrayexpress
TranscriptomicsTranscriptional responses to dark induced senescence in Nicotiana tabacum.
Gene expression was measured in leaves from dark treated tobacco plants to investigate the changes associated with dark induced senescence.
ORGANISM(S): Nicotiana tabacum 
2011-05-01 | E-MTAB-602 | biostudies-arrayexpress
TranscriptomicsIntegrative Molecular Profiling in Leiomyosarcoma
Leiomyosarcoma (LMS) is a soft tissue tumor with a significant degree of morphologic and molecular heterogeneity. We employed integrative molecular profiling to discover and characterize molecular subtypes of LMS. Gene expression profiling was performed on 51 LMS samples. Unsupervised clustering dem...
ORGANISM(S): Homo sapiens 
2009-11-11 | E-GEOD-17555 | biostudies-arrayexpress
TranscriptomicsA Comparison of HEEBO Microarray and 3'-end Sequencing for Expression Quantification (3SEQ) (Archival Tumor Samples)
Gene expression microarrays are the most widely used technique for genome-wide expression profiling. However, microarrays do not perform well on formalin fixed paraffin embedded tissue (FFPET). Consequently, microarrays cannot be effectively utilized to perform gene expression profiling on the vast ...
ORGANISM(S): Homo sapiens 
2010-03-25 | E-GEOD-18209 | biostudies-arrayexpress
GenomicsIdentification by ChIP-Seq of the binding sites of the developmental protein WhiH in the genome of Streptomyces venezuelae
The whiH gene is required for the differentiation of aerial hyphae into spores in Streptomyces species. It is a predicted member of the GntR family of transcription factors and has been shown to bind specifically to a sequence in its own promoter. This ChIP-Seq experiment was carried out to determin...
ORGANISM(S): Streptomyces venezuelae 
2018-12-31 | E-MTAB-6702 | biostudies-arrayexpress
TranscriptomicsPla2g12b and Hpn are Genes Identified by Mouse ENU Mutagenesis that affect HDL cholesterol
Despite considerable progress understanding genes that affect the HDL particle, its function, and cholesterol content, genes identified to date explain only a small percentage of the genetic variation. We used N-ethyl-N-nitrosourea mutagenesis in mice to discover novel genes that affect HDL choleste...
ORGANISM(S): Mus musculus 
2012-06-30 | E-GEOD-37902 | biostudies-arrayexpress
UnknownPhosphinocyclodextrins as confining units for catalytic metal centres. Applications to carbon-carbon bond forming reactions.
Not available
S-EPMC4222288 | biostudies-literature
UnknownNo preferential carbon-allocation to storage over growth in clipped birch and oak saplings.
Not available
S-EPMC7201831 | biostudies-literature
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