De Grandis S S - OmicsDI

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Unknown (92)
Transcriptomics (22)
Proteomics (5)
Metabolomics (3)
Genomics (2)

Organisms

Eucalyptus grandis (6)
Citrus sinensis (4)
Citrus reticulata (3)
Eucalyptus globulus (2)
Bacteroides xylanisolvens (1)
Citrus limonia (1)
Citrus trifoliata (1)
Xylella fastidiosa (1)
Fungi (1)
Psidium cattleyanum (1)
Psidium guajava (1)

Organisms

Stipa capillata (1)

Repository

biostudies-arrayexpress (23)
pride (4)
MetaboLights (3)
ENA (2)
MassIVE (1)

Tissue

Plant cell (3)
Whole plant (2)
Bark (1)
Root (1)
Xylem (1)

Technology Type

Mass Spectrometry (4)
HDMSE (3)
Mass spectrometry assay (2)
Shotgun proteomics (2)
Mass spectrometry (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Axon- GenePix4000B (1)
GenePix 4000B (1)
Xevo G2 Q-Tof (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - positive - acquity-uplc-hss-t3 (1)

Publication Date

2010 (5)
2015 (3)
2014 (3)
2013 (3)
2012 (3)
2026 (3)
2009 (2)
2019 (2)
2011 (1)
2008 (1)
2007 (1)
2006 (1)
2018 (1)
2020 (1)
2025 (1)

CHEBI ID

CHEBI:139033 (1)
CHEBI:15831 (1)
CHEBI:166992 (1)
CHEBI:166993 (1)
CHEBI:166994 (1)
CHEBI:28151 (1)
CHEBI:28833 (1)
CHEBI:30939 (1)
CHEBI:65037 (1)

Metabolite Name

Choline (2)
(+)-Ophiobolin A (1)
(+)-Selfotel (1)
(+)-copalyl diphosphate (1)
(+/-)-1-phenylethanol (1)
(-)-Menthyl (R)-1-[(R)-Alpha-Methylbenzyl]Aziridine-2-Carboxylate (1)
(-)-Polygodial (1)
(-)-beta-Caryophyllene epoxide (1)
(1-Methyl-2,3-Dihydropyridin-6-Ylidene)Hydrazine (1)
(11R,12S,13S)-Epoxy-hydroxyoctadeca-cis-9-cis-15-dien-1-oic acid (1)
(19E)-4-Ethyl-2,16-Didehydrocur-19-En-4-Ium-17-Al (1)
(1S,2S,6R,7R,9R)-6-methyl-10,12-dioxatricyclo[7.2.1.0<2,7>]dodec-4-en-8-one (1)
(1S,4R,5S,23S,26S)-26-hydroxy-4,5,13,13,15,15,31,31-octamethyl-14,32,33-trioxa-7-azanonacyclo[28.2.1.01,27.04,26.05,23.06,21.08,20.010,18.011,16]tritriaconta-6(21),8(20),9,11,16,18,27-heptaen-29-one (1)
(2-Isobutyrylamino-Acetylamino)-Acetic Acid (1)
(2E)-3-(4-Acetoxy-2,3-dihydroxy-2,5,5,8a-tetramethyldecahydro-1-naphthalenyl)acrylic acid (1)
(2E,4E)-N-[2-(4-hydroxyphenyl)ethyl]dodeca-2,4-dienamide (1)
(2E,6E,12E)-19-(2-Amino-2-oxoethyl)-9,11-dihydroxy-8-methoxy-10,12,14-trimethyl-15-oxohenicosa-2,6,12-trienedioic acid (1)
(2R)-2-((2S,3R)-3-methyl-2-((7S)-5-oxo-7,8,13,13b-tetrahydro-5H-benzo[1,2]indolizino[8,7-b]indole-7-carboxamido)pentanamido)propanoic acid (1)
(2R,3S,4S,5R,6R)-2-[[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxymethyl]-6-oct-1-en-3-yloxyoxane-3,4,5-triol (1)
(2S)-1-[(2S)-2-[(5-methoxy-1-methylindole-2-carbonyl)amino]-3-methylbutanoyl]pyrrolidine-2-carboxylic acid (1)
(2S)-2-[[(2S)-3-methyl-2-[[(2S)-3-oxo-2-propan-2-yl-2,4-dihydroquinoxaline-1-carbonyl]amino]butanoyl]amino]-3-phenylpropanoic acid (1)
(2S)-3-(1H-indol-3-yl)-2-[[(2S)-3-methyl-2-[[(2S)-3-oxo-2-propan-2-yl-2,4-dihydroquinoxaline-1-carbonyl]amino]butanoyl]amino]propanoic acid (1)
(2S)-N-(6-methoxy-2,3,4,9-tetrahydro-1H-carbazol-1-yl)-3-methyl-2-(1-oxoisoindolin-2-yl)butanamide (1)
(2S)-N-[(2S)-1-[(2-amino-2-oxoethyl)amino]-4-methyl-1-oxopentan-2-yl]-1-[1-(4-methylphenyl)sulfonylpiperidine-4-carbonyl]pyrrolidine-2-carboxamide (1)
(2S,3S)-3-decyl-2-hydroxy-2-(3-methoxy-3-oxopropyl)butanedioic acid (1)
(2Z)-2-benzothiazol-2-yl-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enenitrile (1)
(2Z)-3-[N-(carboxymethyl)carbamoyl]prop-2-enoic acid (1)
(3,4-dimethoxyphenyl)-N-(1-ethyl-1-methylprop-2-ynyl)carboxamide (1)
(3,4-dimethoxyphenyl)-N-(2-{N-[2-(3,4-dimethoxyphenyl)ethyl]carbamoyl}phenyl)c arboxamide (1)
(3,4-dimethoxyphenyl)-N-(???methyl)carboxamide (1)

First Public Date

2021 (1)
2018 (1)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (3)
Unknown experiment type (1)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (10)
2015 (9)
2014 (9)
2025 (9)
2022 (8)
2010 (7)
2019 (7)
2012 (6)
2018 (6)
2021 (5)
2020 (5)
2017 (5)
2016 (5)
2011 (4)
2023 (4)
2013 (3)
2006 (3)
2009 (2)
2007 (2)
1998 (2)
2008 (1)
2003 (1)
2002 (1)
1991 (1)

Lab affiliation

Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Max Feffer Laboratory of Plant Genetics, Department of Genetics, College of Agriculture “Luiz de Queiroz”, University of São Paulo, Av. Pádua Dias 11, CEP 13418-900, Piracicaba-SP, Brazil (1)

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Eucalyptus grandis BC progeny

The gene expression profiles of the differentiating xylem of 91 Eucalyptus grandis backcross individuals were characterized following a loop design (Churchill, G.A. Nat Genet. 2002 Dec;32 Suppl:490-5). In this design, RNA from genotype 1666 (labeled with Cy5) was hybridized with RNA from genotype 16...

ORGANISM(S): Eucalyptus grandis

2010-06-05 | E-GEOD-502 | biostudies-arrayexpress

A microarray-based method for the parallel analysis of genotypes and expression profiles in Eucalyptus grandis

Fast-growing Eucalyptus grandis trees are one of the most efficient producers of wood in South Africa. It is essential to maximize the effectiveness of these plantations by increasing their productivity, the quality and value of their products. We used microarray-based DNA-amplified fragment length ...

ORGANISM(S): Eucalyptus grandis

2009-10-01 | E-GEOD-14707 | biostudies-arrayexpress

De novo assembly and transcriptomic profiling of the grazing response in Stipa grandis.

Not available

S-EPMC4395228 | biostudies-literature

Comparative Proteomics of Bark and Xylem Provides Insights into Age-Dependent Corticular Photosynthesis in Eucalyptus grandis

Eucalyptus species are vital for the global forestry industry, known for their rapid growth, adaptability, and high biomass production. Beyond their economic importance, eucalyptus plantations contribute to carbon sequestration, playing a crucial role in climate change mitigation by capturing atmosp...

ORGANISM(S): Eucalyptus grandis

2026-02-23 | PXD067762 | Pride

Profiling gene expression during root induction in juvenile and mature cuttings of Eucalyptus grandis revealed developmental and auxin dependent regulation of the microtubule system

Rooting capability is one of the economically traits lost during the juvenile to mature phase change in woody plants. A comprehensive microarray analysis was performed to compare the profiles of gene expression in juvenile and mature cuttings from E. grandis, either auxin treated or untreated on day...

ORGANISM(S): Eucalyptus grandis

2015-05-01 | E-GEOD-57375 | biostudies-arrayexpress

Transcriptomic survey of the midgut of Anthonomus grandis (Coleoptera: Curculionidae).

Not available

S-EPMC5634044 | biostudies-literature

Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae.

Not available

S-EPMC4234063 | biostudies-literature

Proteomic profiles during adventitious rooting of Eucalyptus species relevant to the cellulose industry (Induction)

Adventitious rooting (AR) is an obligatory step for vegetative propagation of commercial woody species. Paper industries have interest in Eucalyptus globulus Labill and its hybrids due to low lignin and lipid contents, which facilitate cellulose extraction. However, this species and some of its hybr...

ORGANISM(S): Eucalyptus grandis Eucalyptus globulus (Blue gum)

2019-08-19 | PXD013924 | Pride

Auxin Adventitious roots Gel-free proteomics Eucalyptus Protein pattern

Proteomic profiles during adventitious rooting of Eucalyptus species relevant to the cellulose industry (Formation)

ORGANISM(S): Eucalyptus grandis Eucalyptus globulus (Blue gum)

2019-08-19 | PXD013925 | Pride

Auxin Adventitious roots Gel-free proteomics Eucalyptus Protein pattern

Transgenic Cotton Plants Expressing Cry1Ia12 Toxin Confer Resistance to Fall Armyworm (Spodoptera frugiperda) and Cotton Boll Weevil (Anthonomus grandis).

Not available

S-EPMC4759279 | biostudies-literature

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