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TranscriptomicsArabidopsis E2F target genes
Entry into the S phase of the cell cycle is controlled by the E2F transcitption factors that induce the transcription of genes required for cell cycle progression and DNA replication. To identify E2F target genes of Arabidopsis on a genome-wide scale, the transcriptome of wild-type plants was compar...
ORGANISM(S): Arabidopsis thaliana 
2008-06-13 | E-GEOD-5529 | biostudies-arrayexpress
TranscriptomicsTranscript profiling of ERF115 transgenic Arabidopsis thaliana
This experiment was set up in order to identify the (direct) transcriptional targets of the Ethylene Response Factor 115 (ERF115) transcription factor. Because ERF115 expression occurs in quiescent center (QC) cells and strong effects on the QC cells were observed in ERF115 overexpression plants, ro...
ORGANISM(S): Arabidopsis thaliana 
2013-11-04 | E-GEOD-48836 | biostudies-arrayexpress
GenomicsAPC/CCCS52A2 repressed phytosulfokine signaling restricts root QC cell proliferation through ERF115 degradation
The quiescent center (QC) plays an essential role during root development by creating a microenvironment that preserves the stem cell fate of its surrounding cells. Strikingly, in order to retain root structure, QC cells only occasionally self-renew, displaying a proliferation rate far below that...
ORGANISM(S): Arabidopsis thaliana 
2013-11-04 | E-GEOD-48793 | biostudies-arrayexpress
TranscriptomicsSingle-Cell Transcriptomics Sheds Light on the Identity and Metabolism of Developing Arabidopsis Leaf Cells
Being the main photosynthetic instrument of vascular plants, leaves are crucial and complex plant organs. To establish the single-cell transcriptomic landscape of these different leaf tissues, we performed high-throughput transcriptome sequencing of individual cells isolated from young leaves of Ara...
ORGANISM(S): Arabidopsis thaliana 
2021-10-15 | E-MTAB-11006 | biostudies-arrayexpress
ModelsVernoux2011_AuxinSignaling_AuxinFluctuating
This model is from the article: The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D, Guédon Y, Armitage...
2024-09-02 | BIOMD0000000352 | BioModels
ModelsVernoux2011_AuxinSignaling_AuxinSingleStepInput
This model is from the article: The auxin signalling network translates dynamic input into robust patterning at the shoo t apex. Vernoux T, Brunoud G, Farcot E, Morin V, Van den Daele H, Legrand J, Oliva M, Das P, Larrieu A, Wells D , Guédon Y, Armita...
2024-09-02 | BIOMD0000000351 | BioModels
TranscriptomicsA Seminavis robusta gene expression atlas
New RNA-seq data was generated to create a large-scale Seminavis robusta gene expression atlas profiling a wide-range of experimental conditions including life cycle stages and abiotic stressors. These stresses encompass among others changes in temperature and salt concentration, silica depletion, h...
ORGANISM(S): Seminavis robusta 
2020-05-28 | E-MTAB-8685 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis leaf blades sampled throughout development from meristematic to expanding to mature state at 10 different timepoints
Arabidopsis leaf blades were sampled throughout development from meristematic through expanding to mature state at 10 different timepoints. The transcript data can be compared to a kinematic and flowcytometric characterisation of the system.
ORGANISM(S): Arabidopsis thaliana 
2004-09-20 | E-MEXP-144 | biostudies-arrayexpress
TranscriptomicsRNA-seq on SIP+-treated mating type minus cultures of Seminavis robusta
In order to obtain a global view on the transcriptional changes induced by the sex-inducing pheromone released by Seminavis robusta mating type plus cells (SIP+), an RNA-seq experiment was conducted. Therefore, purified SIP+ from RP-UPLC/MS was added to MT- cultures, 15 min before light onset after ...
ORGANISM(S): Seminavis robusta 
2016-03-22 | E-MTAB-4056 | biostudies-arrayexpress
TranscriptomicsTransfer of 5 day old Col-0 seedlings to 0ug - 0.3ug per mL bleomycin for 24h
Seeds were plated on sterilized membranes and grown under a 16h/8h light/dark regime at 21ﾰC. After 2 days of germination and 5 days of growth, the membrane was transferred to MS medium containing 0.3 ?g/ml bleomycin for 24 h. Triplicate batches of root meristem material seedlings were harvested for...
ORGANISM(S): Arabidopsis thaliana 
2015-07-10 | E-MEXP-3977 | biostudies-arrayexpress
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