Deamination - OmicsDI

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CHEBI ID

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Modification

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Lab affiliation

National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (3)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (3)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (2)
School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (2)
Lovorka Grgurevic M.D.,Ph.D. Professor of Human Anatomy Director - Center for Proteomics Center for Translational & Clinical Research Medical School University of Zagreb (2)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Epithelial Systems Biology Laboratory National Heart Lung and Blood Institute National Institutes of Health (2)
International Institute of Molecular and Cell Biology in Warsaw, Poland (2)
ReMedy International Research Agenda Unit, IMol Polish Academy of Sciences, Warsaw, Poland (2)
MRC Laboratory of Molecular Biology, Cambridge, UK (2)
School of Biomedical and Healthcare Sciences; Plymouth University (UK) (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (2)
IMol Polish Academy of Sciences, Warsaw, Poland (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
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Cornell University (2)
Medizinisches Proteom-Center (MPC) Ruhr-Universität Bochum Clinical Proteomics - Infection Research Universitaetsstrasse 150, D-44801 Bochum (1)
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Lung Biology, Department of Experimental Medical Science, Lund University, Lund, Sweden. (1)
Bioengineering, Protein Chemistry & Enzyme Technology, Technical Univesity of Denmark (DTU), Denmark (1)
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Cancer Research UK Manchester Institute Systems Oncology (1)
Università degli Studi di Catania, Dipartimento di Scienze Chimiche, Laboratorio di Spettrometria di massa organica (1)
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Department of Chemistry, Princeton University, Princeton, NJ 08544, USA Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08540, USA (1)
Laboratorio de Microbiología de Sistemas, Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago, Chile (1)
Department of Genetics and Development Herbert Irving Comprehensive Cancer Center Columbia University Irving Medical Center New York, NY, USA (1)

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Transcriptome-wide deamination analysis

PRJNA951692 | ENA

DNA cytosine and methylcytosine deamination by APOBEC3B: enhancing methylcytosine deamination by engineering APOBEC3B.

Not available

S-EPMC4613526 | biostudies-literature

Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (Arabidopsis)

PRJNA1119228 | ENA

Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (Maize)

PRJNA1119229 | ENA

Base-excision repair pathway shapes 5-methylcytosine deamination signatures in pan-cancer genomes (CUT&RUN)

PRJNA1149724 | ENA

Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (human)

PRJNA1119227 | ENA

Genome-wide maps of deaminated CPDs (dCPDs) following UV-irradiation in cells and deamination as naked DNA in vitro

PRJNA1201268 | ENA

Base-excision repair pathway shapes 5-methylcytosine deamination signatures in pan-cancer genomes (CUT&RUN)

Transition of cytosine to thymine in CpG dinucleotides is the most frequent type of mutation in cancer. This increased mutability is commonly attributed to the spontaneous deamination of 5-methylcytosine (5mC), which is normally repaired by the base-excision repair (BER) pathway. However, the contri...

ORGANISM(S): Homo sapiens

2024-09-12 | GSE275181 | GEO

Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (Maize)

We present a novel N-nitrosation strategy for deamination capable of tolerating DNA/RNA biological macromolecules under mild conditions. A cooperative catalysis combining a carbonyl organocatalyst with a Lewis acid catalyst facilitates the formation of a C-nitro intermediate from a primary amine, wh...

ORGANISM(S): Zea mays

2025-01-08 | GSE268872 | GEO

Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (human)

ORGANISM(S): Homo sapiens

2025-01-08 | GSE268871 | GEO

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