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MetabolomicsWhole unconditioned medium (Defined culture media, M199),Whole M1 medium,Whole M2 medium
Not available
ORGANISM(S): Homo sapiens 
ST000242 | MetabolomicsWorkbench
MetabolomicsInferring metabolic mechanisms of interaction within a defined gut microbiota
The diversity and number of species present within microbial communities create the potential for a multitude of interspecies metabolic interactions. Here, we develop, apply, and experimentally test a framework for inferring metabolic mechanisms associated with interspecies interactions. We perform ...
2019-10-29 | MTBLS705 | MetaboLights
MetabolomicsGenetically defined human GBM organoids reveal principles of GBM development and actionable targets
Not available
ORGANISM(S): Homo sapiens 
ST002284 | MetabolomicsWorkbench
ProteomicsIsolation method and characterization of outer membranes vesicles of Helicobacter pylori grown in a chemically defined medium
Outer membrane vesicles (OMVs) are small vesicles constitutively shed by all Gram-negative bacterium, which have been proposed to play a role in Helicobacter pylori persistence and pathogenesis. The methods currently available for the isolation of H. pylori OMVs are diverse and time-consuming, raisi...
ORGANISM(S): Helicobacter pylori 26695 
2021-05-31 | PXD025393 | Pride
Proteomics Helicobacter pylori Bacterial outer membrane vesicles Bacteria viability Defined medium Isolation protocol 
MetabolomicsDeep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights
TranscriptomicsA weekly alternating diet between caloric restriction and medium fat protects the liver from NAFLD in middle aged C57BL/6J mice
SCOPE: We investigated whether a novel dietary intervention consisting of an every-other-week calorie-restricted diet could prevent nonalcoholic fatty liver disease (NAFLD) development induced by a medium-fat (MF) diet. METHODS AND RESULTS: Nine-week-old male C57BL/6J mice received either a (i) cont...
ORGANISM(S): Mus musculus 
2015-10-26 | E-GEOD-61233 | biostudies-arrayexpress
GenomicsPorcine oocytes matured in a chemically defined medium are transcriptionally active
Porcine oocytes matured in a chemically defined medium are transcriptionally active
PRJNA898618 | ENA
MetabolomicsMetabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community; Interaction between the kefir isolates Lactococcus lactis and Acetobacter (spent-medium assay, measured untargeted (FIA-qTOF) and targeted (HILIC, LC-MS)

Microbial communities often undergo intricate compositional changes yet also maintain stable coexistence of diverse species. The mechanisms underlying long-term coexistence remain unclear, as system-wide studies have been largely limited to engineered communities, ex situ adapted cultures, or syn...

2020-11-04 | MTBLS1823 | MetaboLights
TranscriptomicsTranscription profiling of Francisella tularensis LVS wild type and hfq mutant strains grown on defined liquid medium (Chamberlains medium)
Comparison of Francisella tularensis LVS wild-type and hfq mutant strains grown in defined liquid medium (Chamberlain's medium)
ORGANISM(S): Francisella tularensis 
2009-05-01 | E-MEXP-1892 | biostudies-arrayexpress
GenomicsThe Suppression of Medium Acidosis Improves the Maintenance and Differentiation of Human Pluripotent Stem Cells at High Density in Defined Cell Culture Medium
The Suppression of Medium Acidosis Improves the Maintenance and Differentiation of Human Pluripotent Stem Cells at High Density in Defined Cell Culture Medium
PRJNA449760 | ENA
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