Deg proteins - OmicsDI

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Transcriptomics (342)
Unknown (267)
Genomics (52)
Proteomics (51)
Metabolomics (5)
Other (1)

Organisms

Homo sapiens (100)
Mus musculus (71)
Arabidopsis thaliana (34)
Saccharomyces cerevisiae (29)
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Schizosaccharomyces pombe (12)
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Drosophila melanogaster (10)
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unidentified (1)
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Organisms

Mus musculus (9)
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Caenorhabditis elegans (1)
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Pseudomonas aeruginosa (1)
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Repository

biostudies-arrayexpress (322)
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pride (40)
geo (32)
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Tissue

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Blood serum (1)
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Disease

Normal (6)
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Perilobar nephrogenic rest (1)
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Breast Carcinoma (1)
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Locally advanced rectal cancer (1)
Adenoid cystic carcinoma (1)
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Paracoccidioidomycosis (1)
Prostate adenocarcinoma (1)
Cardiovascular system disease (1)
Heart failure (1)
Acute myeloid leukemia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (27)
Bottom-up proteomics (8)
Data-dependent acquisition (4)
Mass spectrometry (3)
Mass spectrometry assay (2)
SWATH MS (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Metaproteomics (1)
Proteogenomics (1)
Data-independent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Exactive (Thermo Scientific) (3)
Axon GenePix 4000B scanning hardware (2)
Q Exactive Plus (2)
Q Exactive HF-X (2)
Orbitrap Fusion Lumos (2)
Sony MA-900 cell sorter (1)
Quiagen Mini prep kit (1)
418 [Affymetrix] (1)
Scanning hardware (1)
Sony SH800S (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
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Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2008 (156)
2007 (43)
2010 (30)
2024 (18)
2013 (18)
2025 (17)
2009 (16)
2014 (15)
2012 (15)
2011 (14)
2023 (12)
2026 (10)
2021 (8)
2016 (8)
2022 (8)
2020 (4)
2019 (4)
2017 (4)
2015 (3)
2018 (3)
2006 (1)

CHEBI ID

CHEBI:16015 (2)
CHEBI:17191 (2)
CHEBI:28865 (2)
CHEBI:30473 (1)
CHEBI:59445 (1)
CHEBI:89321 (1)
CHEBI:89434 (1)
CHEBI:89673 (1)
CHEBI:89663 (1)
CHEBI:75472 (1)
CHEBI:89685 (1)
CHEBI:89800 (1)
CHEBI:89781 (1)
CHEBI:88963 (1)
CHEBI:89157 (1)
CHEBI:89200 (1)
CHEBI:89201 (1)
CHEBI:89220 (1)
CHEBI:88548 (1)
CHEBI:88481 (1)
CHEBI:88467 (1)
CHEBI:88823 | CHEBI:132275 (1)
CHEBI:137193 | CHEBI:34490 (1)
CHEBI:16488 | CHEBI:16026 (1)
CHEBI:66942 | CHEBI:66951 (1)
CHEBI:89609 | CHEBI:133460 (1)
CHEBI:21553 | CHEBI:73685 (1)
CHEBI:72689 | CHEBI:84651 (1)
CHEBI:86261 (1)
CHEBI:37654 | CHEBI:37655 (1)

Metabolite Name

Taurocholic acid (2)
1-hydroxytriazolam (1)
Trans-56-Dihydro-56-dihydroxy-712-dimethylbenzaanthracene (1)
Trans-34-Dihydro-34-dihydroxy-712-dimethylbenzaanthracene (1)
Hexadecanoate (n-C16:0) (1)
24-Dimethylpimelic acid (1)
(9S10S)-910-dihydroxyoctadecanoate (1)
(9S10S)-10-hydroxy-9-(phosphonooxy)octadecanoate (1)
DG(20:1n90:018:4n3) (1)
DG(18:1n90:020:4n3) (1)
DG(18:1n90:020:4n6) (1)
DG(18:1n70:020:4n3) (1)
DG(18:1n70:020:4n6) (1)
DG(16:1n70:022:4n6) (1)
DG(18:00:020:5n3) (1)
DG(16:00:022:5n3) (1)
DG(16:00:022:5n6) (1)
D-Glucaro-14-lactone (1)
Isopropyl 3-(34-dihydroxyphenyl)-2-hydroxypropanoate (1)
D-15-Anhydrofructose (1)
(EE)-44-Bi(N-4-hydroxycinnamoylserotonin) (1)
(R)-34-Dihydro-8-hydroxy-3-tridecyl-1H-2-benzopyran-1-one (1)
(7x8x)-47-Epoxy-38-bilign-7-ene-35-dimethoxy-499-triol (1)
2-(4-Hydroxyphenyl)-36-dimethoxy-88-dimethyl-4H8H-benzo12-b:34-bdipyran-4-one (1)
6-O-Acetylvicenin 1 (1)
1-(4-Hydroxy-35-dimethoxyphenyl)-7-(4-hydroxy-3-methoxyphenyl)-35-heptanediol (1)
57-Megastigmadien-9-ol glucoside (1)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
4-Hydroxy-55-diisopropyl-22-dimethyl-34-biphenylquinone (1)
23-Dehydrosalvipisone (1)

First Public Date

2024 (8)
2022 (7)
2025 (6)
2020 (6)
2014 (6)
2021 (4)
2026 (2)
2019 (2)
2023 (1)
2018 (1)
2016 (1)

Classification

bacteria (3)
fungi (1)

Study type

Transcription profiling by array (246)
RNA-seq of coding RNA (20)
ChIP-chip by array (12)
Comparative genomic hybridization by array (11)
Other (9)
RNAi profiling by array (5)
ChIP-chip by tiling array (3)
ChIP-seq (3)
Genotyping by array (2)
Methylation profiling by high throughput sequencing (2)
Cell line - One-color microarray (1)
Translation profiling (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2008 (156)
2007 (45)
2022 (36)
2010 (35)
2024 (34)
2025 (31)
2023 (29)
2020 (29)
2021 (27)
2013 (22)
2014 (21)
2016 (20)
2012 (20)
2009 (18)
2011 (16)
2018 (12)
2019 (11)
2015 (9)
2017 (7)
2026 (6)
2006 (2)
2001 (2)
2003 (1)

Lab affiliation

Institute of Plant Sciences Faculty of Agriculture The Hebrew University of Jerusalem Rehovot 76100 ISRAEL (2)
Harvard University (2)
Neurovascular Research Laboratory, Vall d’Hebron Institute of Research (VHIR), Universitat Autònoma de Barcelona, Barcelona, Spain. Stroke Research Program, Institute of Biomedicine of Seville, IBiS/Hospital Universitario Virgen del Rocío/CSIC/University of Seville & Department of Neurology, Hospital Universitario Virgen Macarena, Seville, Spain (1)
, Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093-0202 (1)
Head of the Department, Proteomics Core (1)
Jens Nielsen, PhD, Dr. Tech. Professor Director of Systems and Synthetic Biology Chief Scientific Officer Novo Nordisk Foundation Center for Biosustainability Systems and Synthetic Biology Chalmers University of Technology Kemivägen 10 SE-412 96 Göteborg SWEDEN (1)
University of Queensland (1)
ZEA-3 Analytics, Forschugnszentrum Jülich (1)
Hong Kong Baptist University (1)
Director, Vancouver Prostate Centre Chief Executive Officer, PC-TRiADD Distinguished Professor and Head, Department of Urologic Sciences, UBC BC Leadership Chair in Prostate Cancer Research (1)
Director-Research Aravind Medical Research Foundation (1)
Chemistry Department, The Scripps Research Institute, La Jolla, California, USA (1)
Department of Radiology Stanford School of Medicine Stanford University (1)
Laboratory Head Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville, AUS 3052 (1)
Department of Molecular Genetics Weizmann Institute of Science (1)
School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin (1)
Federal university of São Paulo - Institute of Science and Technology - Applied immunology lab (1)
The Smidt Heart Institute, Cedars Sinai Medical Center Cedars-Sinai Medical Center 6David Geffen School of Medicine at UCLA (1)
Proteome Exploration Laboratory, California Institute of Technology, Pasadena, CA 91125, USA (1)
Division of Cell Matrix Biology & Regenerative Medicine and KNH Centre for Biomedical Egyptology Faculty of Biology, Medicine and Health University of Manchester United Kingdom (1)
Biomedical Research Institute, Foundation for Research and Technology-Hellas, University Campus, 45110 Ioannina, Greece (1)
The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University, Rehovot 76100, Israel (1)
School of Biomedical Sciences, The University of Hong Kong (1)
College of Veterinary Medicine, Shanxi Agricultural University, Taigu, Shanxi Province 030801, People’s Republic China. (1)
Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warszawa, Poland (1)
INRAE Evolution and Specificity of Multitrophic Interactions (ESIM), Sophia Agrobiotech Institute (ISA) 400 route des Chappes, Sophia Antipolis 06903, France (1)
IBP RAS (1)
Huazhong Agricultural University (1)
Department of Chemistry, Ben-Gurion University of the Negev, Israel. (1)
Mendel University in Brno (1)

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Imperfect Redundancy in the Family of Thylakoid Lumen Deg Proteases in Arabidopsis Helps Identifying Their Potential Substrates

Deg proteases are involved in protein quality control and response to stress in prokaryotic organisms. Out of the 16 Deg-encoding genes of Arabidopsis, the products of three, Deg1, Deg5 and Deg8, are located in the thylakoid lumen. Deg1 forms homo-hexamers, degrading photosynthetic proteins, especia...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2022-01-17 | PXD008920 | Pride

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family.

Not available

S-EPMC4130198 | biostudies-literature

Caenorhabditis elegans paraoxonase-like proteins control the functional expression of DEG/ENaC mechanosensory proteins.

Not available

S-EPMC4831881 | biostudies-literature

Ssn6HA-ts VS WT @ 36 Deg

We have performed a genome wide expression profile study of the transcriptional co-repressor proteins Ssn6 in Schizosaccharomyces pombe. The expression of a conditional Ssn6HA-ts strain was compared against the expression in a WT strain as described before (Xue et al, 2004), except that cells were s...

ORGANISM(S): Schizosaccharomyces pombe

2006-11-15 | GSE5714 | GEO

Insights into the Cyanobacterial Deg/HtrA Proteases.

Not available

S-EPMC4877387 | biostudies-literature

Degradation of PsbO by the Deg protease HhoA Is thioredoxin dependent.

Not available

S-EPMC3446894 | biostudies-literature

The Drosophila gene CheB42a is a novel modifier of Deg/ENaC channel function.

Not available

S-EPMC2827562 | biostudies-literature

Ribonucleoprotein immunoprecipitation of fission yeast to study myosin proteins and other cytoskeletal components

Ribonucleoprotein immunoprecipitation microarray (RIp-chip) study using various myosin proteins and other cytoskeletal components from the fission Schizosaccaromyces pombe

ORGANISM(S): Schizosaccharomyces pombe

2009-09-01 | E-TABM-656 | biostudies-arrayexpress

Drosophila DEG/ENaC pickpocket genes are expressed in the tracheal system, where they may be involved in liquid clearance.

Not available

S-EPMC149970 | biostudies-literature

Neurotoxic unc-8 mutants encode constitutively active DEG/ENaC channels that are blocked by divalent cations.

Not available

S-EPMC3727304 | biostudies-literature

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