Delgado M M - OmicsDI

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Unknown (3214)
Proteomics (62)
Transcriptomics (53)
Genomics (12)
Metabolomics (11)
Models (1)

Organisms

Bombyx mori (60)
Onchocerca volvulus (60)
Klebsiella pneumoniae (60)
Musca domestica (60)
Brugia malayi (60)
Schizosaccharomyces pombe (60)
Streptomyces coelicolor A3(2) (60)
Sus scrofa (60)
Human immunodeficiency virus 1 (60)
Oryza sativa Indica Group (60)
Sinorhizobium meliloti BL225C (60)
Vitis (60)
Sus scrofa domesticus (60)
Ostreococcus tauri (60)
Saccharomyces cerevisiae (60)
Synechocystis sp. PCC 6803 (60)
Olavius algarvensis Gamma 1 endosymbiont (60)
Vitis vinifera (60)
Saccharopolyspora erythraea (60)
Homo sapiens (34)
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Saccharomyces cerevisiae (1)
Candida albicans (1)
Rattus norvegicus (1)

Repository

pride (60)
biostudies-arrayexpress (57)
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Tissue

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Hepatocyte (2)
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Disease

COVID-19 (5)
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Mock infected (1)
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Metabolic dysfunction-associated steatotic liver disease (1)
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Melanoma (1)
Pulmonary tuberculosis (1)
Pancreatic cancer (1)
Tuberculosis (1)
Urinary bladder cancer (1)
Male infertility (1)
Type 2 diabetes mellitus (1)
Cystic fibrosis (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (31)
Bottom-up proteomics (10)
Mass spectrometry (9)
Data-independent acquisition (8)
DiaPASEF (5)
Data-dependent acquisition (5)
Top-down proteomics (3)
MSE (2)
All-ion fragmentation (2)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2565BA DNA microarray scanner [Agilent] (1)
Q Exactive (1)
Q Exactive HF (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2022 (16)
2012 (13)
2025 (12)
2026 (12)
2014 (10)
2023 (8)
2024 (7)
2016 (7)
2015 (7)
2019 (6)
2020 (5)
2013 (5)
2011 (5)
2021 (5)
2007 (3)
2018 (2)
2017 (2)
2010 (2)
2009 (2)
2008 (1)

CHEBI ID

CHEBI:16750 (4)
CHEBI:16610 (4)
CHEBI:16335 (4)
CHEBI:17858 (3)
CHEBI:16708 (3)
CHEBI:17268 (3)
CHEBI:29016 (3)
CHEBI:16704 (3)
CHEBI:27082 (2)
CHEBI:29042 (2)
CHEBI:16264 (2)
CHEBI:16927 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:16344 (2)
CHEBI:18237 (2)
CHEBI:4170 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:16811 (2)
CHEBI:18257 (2)
CHEBI:17562 (2)
CHEBI:28123 (2)
CHEBI:25017 (2)
CHEBI:27956 (2)
CHEBI:17148 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:21891 (2)

Metabolite Name

Adenine (3)
7-Aminomethyl-7-carbaguanine (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Phosphoric acid (2)
Guanosine (2)
Arginine (2)
Adenosine (2)
Uracil (2)
Spermine (2)
N6-methyladenosine (2)
Putrescine (2)
Adenosine (2)
Sphinganine (2)
Spermidine (2)
Alanine (2)
Glucose (2)
Trehalose (2)
N-acetyl-D-mannosamine 6-phosphate (1)
3-keto-L-gulonic acid (1)
1,3-bisphospho-D-glyceric acid (1)
DG(PGF1alpha/0:0/15:0) (1)
PE(PGF1alpha/22:4(7Z,10Z,13Z,16Z)) (1)
Methyl 5-(methoxymethyl)-4,5-dimethyl-2-oxofuran-3-carboxylate (1)
Nx2 toxin (1)
2-(3-hexyl-4-methyl-2,5-dioxopyrrol-1-yl)-3-hydroxybutanoic acid (1)
7-methyl-2-(4-pyrimidin-2-ylpiperazin-1-yl)-7,8-dihydro-6H-quinazolin-5-one (1)
(2R)-2-Amino-4-(amino-butyl-oxo-lambda6-sulfanylidene)butanoic acid (1)
2-((3-ethoxy-3-oxopropanoyl)oxy)-n,n,n-trimethylethan-1-aminium (1)
N-phenyl-N'-(2-{[5-(4-pyridinyl)-1,3,4-oxadiazol-2-yl]sulfanyl}acetyl)urea (1)
1,2,2,6,6-pentamethylpiperidin-4-ol (1)

IsPrivate

False (1)

First Public Date

2020 (1)

Modelling Approach

Steady-state model (1)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (32)
Methylation profiling by array (8)
RNA-seq of coding RNA (4)
Other (3)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
Cell line - Single-cell sequencing (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)

Release Date

2022 (463)
2025 (414)
2023 (380)
2021 (350)
2024 (348)
2020 (246)
2019 (204)
2018 (161)
2017 (120)
2015 (113)
2016 (102)
2014 (78)
2026 (58)
2012 (54)
2013 (52)
2011 (30)
2009 (28)
2010 (22)
2008 (14)
2007 (11)
2006 (10)
2005 (6)
2003 (2)
1998 (2)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Vanderbilt University Proteomics Core (4)
Instituto de Biotecnología y Biología Molecular (IBBM-CONICET). La Plata, Buenos Aires, Argentina. (2)
Division of Gastroenterology and Hepatology, School of Medicine, University of Colorado Anschutz Medical Campus,Colorado, USA (2)
UCLA (2)
Cell Signalling & Immunology, School of life Sciences, University of Dundee (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Vascular Dysfunction Department European Center for Angioscience Medical Faculty Mannheim Heidelberg University (1)
Instituto de Biología Molecular y Celular de Plantas, CSIC-Universidad Politécnica de Valencia, Valencia, Spain. Tel: +34-963879931 (1)
Division of Biotechnology, MELISA Institute, Concepción, Chile. (1)
Molecular Biology of Reproduction and Development Research Group; Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS); Fundació Clínic per a la Recerca Biomèdica (FCRB); Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona; Biochemistry and Molecular Genetics Service, Hospital Clínic, Barcelona, Spain (1)
Genetics Unit, Department of Biomedical Sciences, Faculty of Medicine, Casanova 143, 08036 Barcelona, Spain (1)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
Finley and Gygi lab - Cell Biology Department - Harvard Medical School (1)
Proteomics Lab. SaBio research group. Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC-UCLM.JCCM) (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC) and CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, Spain (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
Prof. Dr. Martin von Bergen Head of Department of Molecular Systems Biology Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 1211 Martin.vonbergen@ufz.de, http://www.ufz.de/index.php?de=40881 (1)
CNIC, Spain (1)
Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA (1)
EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003 Barcelona, Spain (1)
Department of Tumour Immunology. Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26-28, 6525 GA Nijmegen, The Netherlands. (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Medical Oncology Department, La Paz University Hospital (1)
Institute for Quantitative and Computational Biosciences (QCBio), University of California, Los Angeles, USA Department of Microbiology, Immunology, and Molecular Genetics (MIMG), University of California, Los Angeles, LA, USA Molecular Biology Institute, University of California, Los Angeles, USA (1)
Novartis Institutes for Biomedical Research, 22 Windsor Street, Cambridge MA 02139, USA (1)
Proteomics Service CIC bioGUNE Build. 800 Bizkaia Tech. Park 48160 Derio (Spain) (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)

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Structural Characterization and Thermoelectric Properties of Br-Doped AgSn_m[Sb_0.8Bi_0.2]Te_2+m Systems.

Not available

S-EPMC10419848 | biostudies-literature

Drivers of tropical rainforest composition and alpha diversity patterns over a 2,520 m altitudinal gradient.

Not available

S-EPMC6540655 | biostudies-literature

TLR7 Activation in M-CSF-Dependent Monocyte-Derived Human Macrophages Potentiates Inflammatory Responses and Prompts Neutrophil Recruitment.

Not available

S-EPMC10315069 | biostudies-literature

iJD1249 - Pseudomonas aeruginosa PAO1

No description

2025-04-07 | MODEL2504040001 | BioModels

CTH exacerbates Helicobacter pylori immunopathogenesis by promoting macrophage metabolic remodeling and activation

Macrophages play a crucial role in the inflammatory response to the human stomach pathogen Helicobacter pylori, which infects half of the world's population and causes gastric cancer. Recent studies have highlighted the importance of macrophage immunometabolism in their activation state and function...

2022-06-14 | MTBLS2851 | MetaboLights

Comparative proteomics of Mycoplasma pneumoniae clinical isolates

The human respiratory tract pathogen M. pneumoniae is one of the best characterized minimal bacterium. Until now, two main groups of clinical isolates of this bacterium have been described (types 1 and 2), differing in the sequence of the P1 adhesin gene. Here, we have sequenced the genomes of 23 cl...

ORGANISM(S): Mycoplasma pneumoniae M129-B7

2016-07-05 | PXD002501 | Pride

Proteomics Mycoplasma pnemoniae

Comparative Genomics of Field Isolates of Mycobacterium bovis and M. caprae Provides Evidence for Possible Correlates with Bacterial Viability and Virulence.

Not available

S-EPMC4652870 | biostudies-literature

Primary acute lymphoblastic leukemia cells are susceptible to microtubule depolymerization in G1 and M phases through distinct cell death pathways.

Not available

S-EPMC9123221 | biostudies-literature

Hypusination Orchestrates the Antimicrobial Response of Macrophages

Innate responses of myeloid cells defend against pathogenic bacteria via inducible effectors. Deoxyhypusine synthase (DHPS) catalyzes the transfer of the N-moiety of spermidine to the lysine-50 residue of eukaryotic translation initiation factor 5A (EIF5A) to form the amino acid hypusine. Hypusinate...

2021-04-06 | MTBLS607 | MetaboLights

m-EASIX (better than EASIX) predicts severe CAR T-cell toxicities, worse overall survival, and discriminates cytokine release syndrome from sepsis.

Not available

S-EPMC12819699 | biostudies-literature

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