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MetabolomicsThe plasticity of the grapevine berry transcriptome
Vitis vinifera cultivar Corvina clone 48 berries were harvested from different vineyards, each located in one of the three most important wine production macro-areas of the Verona region: Bardolino, Valpolicella and Soave, on the basis of the site geographical coordinates. For each of the selected v...
2013-11-04 | MTBLS39 | MetaboLights
TranscriptomicsVitis vinifera Transcriptome or Gene expression
itis vinifera cv. Tannat is largely cultivated in Uruguay for the production of high quality red wines. Its most notable characteristic is an elevated content of polyphenolic compounds, which provide an intense purple color and remarkable antioxidant properties to the wine. To characterize the genet...
ORGANISM(S): Vitis vinifera 
2014-01-09 | E-MTAB-4278 | biostudies-arrayexpress
TranscriptomicsGeneration of transcriptome catalogs for global analysis of gene expression in non-model organisms
We have developed a method based on 454 sequencing of 3â?? cDNA fragments from a normalized library constructed from pooled RNAs to generate, through de novo reads assembly, a large catalog of unique transcripts in organisms for which a comprehensive collection of transcripts or the complete genome ...
ORGANISM(S): Vitis vinifera 
2010-06-25 | E-GEOD-14276 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana Growth is Negatively Regulated by the Class III Peroxidase AtPrx71 during Development and in Response to Cell Wall Damage
The cell wall is a crucial structure in plant cells, and modifications in its composition often have a major impact on growth and development. However, the molecular mechanisms responsible for the negative effects of cell wall alterations on plant growth are largely unknown. It was previously shown ...
ORGANISM(S): Arabidopsis thaliana 
2016-01-06 | E-GEOD-66980 | biostudies-arrayexpress
TranscriptomicsResistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses
Downy mildew, caused by the oomycete Plasmopara viticola, is a serious disease in Vitis vinifera, the most commonly cultivated grapevine species. Several wild Vitis species have instead shown resistance to this pathogen and they have been used as a source to introgress resistance into a V. vinifera ...
ORGANISM(S): Vitis vinifera 
2011-04-28 | E-GEOD-28851 | biostudies-arrayexpress
TranscriptomicsThe grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
The first genome-wide transcriptomic atlas of grapevine (Vitis vinifera) is based on 54 diverse samples expressing ~93% of predicted grapevine genes. Pollen and senescent leaves have unique transcriptomes but microarray analysis grouped all other samples into vegetative/green or mature/woody categor...
ORGANISM(S): Vitis vinifera 
2012-09-10 | E-GEOD-36128 | biostudies-arrayexpress
TranscriptomicsRNAs expression profiling in a resistant and a susceptible grapevine cultivar to Plasmopara viticola
Plasmopara viticola (Berk. and Curt.) Berl. and de Toni is the agent of the destructive disease known as grapevine downy mildew, for the control of which intensive fungicide treatments are required. Natural sources of resistance are available in several wild Vitis species, which are being used in tr...
ORGANISM(S): Vitis riparia 
2010-06-24 | E-GEOD-18596 | biostudies-arrayexpress
TranscriptomicsGeneration of a transcriptome catalog for global analysis of gene expression in Ampelomyces quisqualis during mycoparasitization
In this work, 454 pyrosequencing was used to build up a 3M-bM-^@M-^Y cDNA fragment library from a normalized library constructed from pooled RNA samples extracted at different stages of A. quisqualis mycoparasitization process (recognition, early and late parasitization). An extensive catalogue of u...
ORGANISM(S): Ampelomyces quisqualis 
2014-07-11 | E-GEOD-22888 | biostudies-arrayexpress
TranscriptomicsExpression profiling in grapevine berry during development and withering processes
Grapevine is a commercially important fruit crop that provides berries for direct consumption, juice pressing, drying (raisins), and fermentation to produce wine. The economic value of the crop has encouraged many researchers to study the physiological and molecular basis of berry development, parti...
ORGANISM(S): Vitis vinifera 
2010-09-24 | E-GEOD-20511 | biostudies-arrayexpress
TranscriptomicsStudy of Bacillus cereus spore germination and outgrowth in a vegetable food model by means of genome-wide transcriptome analysis
Pathogenic species belonging to Bacillus cereus sensu lato group possess a high evolutionary advantage in the environment and in food matrices thanks to their capacity to survive as silent spores to harsh environmental insults and grow at relatively low temperatures. Ready to re-heat products are at...
ORGANISM(S): Bacillus cereus 
2015-01-26 | E-GEOD-65259 | biostudies-arrayexpress
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