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TranscriptomicsTranscription profiling of human inflammatory breast carcinoma tumors (luminal, basal and apocrine)
EORTC 10994 is a phase III clinical trial comparing FEC with ET in patients with large operable, locally advanced or inflammatory breast cancer (www.eortc.be). Frozen biopsies were taken at randomisation. RNA was extracted from 100um thickness of 14G core needle biopsies. Adjacent sections were test...
ORGANISM(S): Homo sapiens 
2007-08-14 | E-GEOD-1561 | biostudies-arrayexpress
Transcriptomicsembryogenesis ws-somatic embryogenesis
gnp07_regeneome_embryogenesis - embryogenesis ws - Identify genes involved in somatic embryogenesis - To compare embryogenic areas of a callus with undifferenciate area in the same callus 3 dye-swap - tissue comparison
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-30383 | biostudies-arrayexpress
Transcriptomicsembryogenesis col0-somatic embryogenesis
gnp07_regeneome_embryogenesis - embryogenesis col0 - Identify genes involved in somatic embryogenesis - compare embryogenic areas of a callus with undifferenciate area in the same callus 4 dye-swap - tissue comparison
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-30425 | biostudies-arrayexpress
TranscriptomicsMicrodissection vs. no microdissection: Transcriptome bias induced by protocols used in microdissection
gnp07_regeneome_microdissectionbias - microdissection vs no microdissection - Transcriptome bias induce by protocols used in microdissection - To compare RNA from flowers and RNA from microdissected flowers to know bias induce by microdissection (dissection from all tissues were collected to have a ...
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-30265 | biostudies-arrayexpress
Transcriptomicsevolution of genotypes and differences - affy_gnp07_regeneome_cotton
affy_gnp07_regeneome_cotton - evolution of genotypes and differences - Genes involved in somatic embryogenesis 24 arrays - Cotton; genotype and ecotype comparison,time course The samples are from the following varieties of Gossypium hirsutum (wild type): - Irma from variety NEmb - 1a and B2 are tw...
ORGANISM(S): Gossypium 
2012-05-31 | E-GEOD-31005 | biostudies-arrayexpress
TranscriptomicsCUC2 mutant tissues vs. wild type cuc2-Gnp07_Regeneome_cuc2
gnp07_regeneome_cuc2 - cuc2 - CUC2 is expressed in meristem. It permits to create organs boundaries. It is also expressed in leave margins. Is there a mecanism meristem like in leave margins? - To compare wt and cuc2 leaf margins. And compare teeth and hollow inside the arabidopsis leaf margin. 8 dy...
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-30260 | biostudies-arrayexpress
Transcriptomicsembryogenesis ws-somatic embryogenesis
gnp07_regeneome_embryogenesis - embryogenesis ws - Identify genes involved in somatic embryogenesis - To compare embryogenic areas of a callus with undifferenciate area in the same callus 3 dye-swap - tissue comparison
ORGANISM(S): Arabidopsis thaliana 
2013-04-11 | E-GEOD-45940 | biostudies-arrayexpress
TranscriptomicsMicrodissection: Transdifferentiation of Root Apical Meristem to Shoot Apical Meristem
gnp07_regeneome_transdifferenciation - microdissection - Study of the moleculars mecanism during transdifferenciation of Root ApicalMeristem to Shoot Apical Meristem - middle of growth permits to induce transdifferenciation of root apical meristem to shoot apical meristem 6 dye-swap - time course
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-30259 | biostudies-arrayexpress
UnknownHigher levels of host-cell DNA methylation markers ZNF582 and ASCL1 on anal smears are predictive for progression to anal cancer in patients with previous high-grade lesions.
Not available
S-EPMC12508813 | biostudies-literature
Transcriptomics"Off-context" gene expression in lung cancer identifies a group of metastatic-prone tumors
An unexplored consequence of epigenetic alterations associated with cancer is the ectopic expression of tissue-restricted genes. Here, a new strategy was developed to decipher genome-wide expression data in search for these “off-context” gene activations, which consisted first, in identifying a larg...
ORGANISM(S): Homo sapiens 
2013-05-24 | E-GEOD-30219 | biostudies-arrayexpress
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