Desai S S - OmicsDI

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Unknown (2596)
Transcriptomics (51)
Genomics (37)
Proteomics (27)
Metabolomics (5)

Organisms

Caenorhabditis elegans (37)
Homo sapiens (31)
Bombyx mori (23)
Schizosaccharomyces pombe (23)
Human immunodeficiency virus 1 (23)
Oryza sativa Indica Group (23)
Sinorhizobium meliloti BL225C (23)
Sus scrofa domesticus (23)
Ostreococcus tauri (23)
Saccharomyces cerevisiae (23)
Vitis vinifera (23)
Staphylococcus aureus (23)
Rattus norvegicus (23)
Escherichia coli (23)
Candida albicans (23)
Cyanophora paradoxa (23)
Bursaphelenchus xylophilus (23)
Pseudomonas aeruginosa SJTD-1 (23)
Rhizobium sp. Leaf68 (23)
Canis lupus familiaris (23)
Camelus dromedarius (23)
Mus musculus (6)
Rattus norvegicus (5)
Candida albicans (2)
Ipomoea batatas (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Schizosaccharomyces pombe (1)
Plasmodium falciparum (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (81)
pride (23)
EGA (6)
MetaboLights (4)
MassIVE (3)
GNPS (1)
iProX (1)
ENA (1)

Tissue

Cell culture (8)
JURKAT cell (2)
Lung (2)
Epithelial cell (2)
Stromal cell (1)
Cerebellum (1)
Sensory neuron of dorsal root ganglion (1)
Spinal root (1)
Multipotent stem cell (1)
Feces (1)
Brain (1)
Stem cell (1)
Fibroblast (1)
Primary cell (1)
Liver (1)
Monocyte (1)
Blood cell (1)
Colon (1)
T cell (1)
Blood (1)

Disease

Type 2 diabetes mellitus (2)
Colon cancer (2)
Acute leukemia (2)
Capillary leak syndrome (1)
Neurodevelopmental abnormality (1)
Lung small cell carcinoma (1)
Cardiovascular system disease (1)
Sciatic nerve (1)
Disease free (1)

Technology Type

Mass Spectrometry (23)
Bottom-up proteomics (9)
Shotgun proteomics (8)
Data-dependent acquisition (7)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Codelink Human Whole Genome Bioarray (1)
Illumina MiSeq, ILLUMINA (1)
Glycoproteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (2)
Q Exactive Plus (2)
TSQ Quantis (1)
AB SCIEX Triple TOF 5600 (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2011 (25)
2013 (18)
2016 (7)
2024 (7)
2021 (6)
2014 (6)
2025 (6)
2015 (5)
2012 (5)
2010 (5)
2008 (5)
2023 (5)
2022 (4)
2026 (3)
2009 (2)
2007 (1)
2017 (1)
2020 (1)
2019 (1)

CHEBI ID

CHEBI:15611 (3)
CHEBI:16010 (3)
CHEBI:26271 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:30769 (3)
CHEBI:44897 (2)
CHEBI:16865 (2)
CHEBI:7916 (2)
CHEBI:16958 (2)
CHEBI:15978 (2)
CHEBI:17050 (2)
CHEBI:6650 (2)
CHEBI:78320 (2)
CHEBI:17234 (2)
CHEBI:27266 (2)
CHEBI:25017 (2)
CHEBI:24898 (2)
CHEBI:27570 (2)
CHEBI:16449 (2)
CHEBI:25094 (2)
CHEBI:26986 (2)
CHEBI:18186 (2)
CHEBI:28044 (2)
CHEBI:27897 (2)
CHEBI:15356 (2)
CHEBI:17822 (2)
CHEBI:15428 (2)
CHEBI:32816 (2)
CHEBI:30915 (2)

Metabolite Name

Glucose (and isomers) (1)
Valeric/Isovaleric Acid (1)
Butyric/Isobutyric Acid (1)
Hesperetin sulfate (1)
Naringenin sulfate (1)
No match: 1030.08 (1)
No match: 2824.20 (1)
No match: 1419.85 (1)
No match: 2955.81 (1)
No match: 2560.29 (1)
No match: 1725.47 (1)
No match: 2577.97 (1)
No match: 2058.53 (1)
No match: 2937.35 (1)
No match: 1155.19 (1)
No match: 2578.39 (1)
No match: 1909.62 (1)
No match: 1898.87 (1)
No match: 2510.90 (1)
No match: 2590.17 (1)
No match: 2629.75 (1)
No match: 1289.60 (1)
No match: 1308.63 (1)
No match: 1249.16 (1)
No match: 2520.76 (1)
No match: 1350.74 (1)
No match: 1054.48 (1)
No match: 1693.92 (1)
No match: 1888.53 (1)
No match: 2022.86 (1)

First Public Date

2019 (1)

Study type

ChIP-seq (30)
Transcription profiling by array (27)
ChIP-chip by tiling array (13)
RNA-seq of coding RNA (11)

Release Date

2022 (332)
2021 (305)
2023 (301)
2025 (284)
2024 (270)
2020 (231)
2019 (163)
2017 (128)
2018 (118)
2016 (108)
2015 (97)
2013 (65)
2014 (64)
2011 (55)
2026 (47)
2012 (36)
2010 (20)
2008 (18)
2009 (17)
2007 (5)
2006 (4)
2005 (3)
2004 (2)
2003 (2)
2002 (1)
2001 (1)

Lab affiliation

Biological Chemistry, University of California Los Angeles, United States (2)
Biological Chemistry Department, David Geffen School of Medicine, UCLA (2)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Assistant Professor Department of Cellular and Molecular Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Bruce M. Spiegelman, Ph D. Stanley J. Korsmeyer Professor of Cell Biology and Medicine Dana-Farber Cancer Institute, Harvard Medical School bruce_spiegelman@dfci.harvard.edu 617-632-3567 (1)
Department of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY (1)
National Tsing Hua University (1)
Department of Psychiatry and Neurochemistry, Sahlgrenska Academy at the University of Gothenburg, SE-431 80 Mölndal, Sweden (1)
Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA (1)
Lung and Vascular Inflammation Section Laboratory of Allergic Diseases, NIAID, NIH USA (1)
Walter and Eliza Hall Institute of Medical research (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Professor Biology, Dalhousie University (1)
Harvard Medical School, Department of Cell Biology (1)
Astrazeneca (1)
Chemical Proteomics, Division of Chemistry I, MBB Dept., Biomedicum, Karolinska Insitute, Stockholm, Sweden (1)
Principle Investigator (1)
North Carolina State University (1)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (lab head) (1)
University (1)

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Desai OD00079_HCP3_N2_MXEMB

modENCODE_submission_2446 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...

ORGANISM(S): Caenorhabditis elegans

2010-07-07 | E-GEOD-22742 | biostudies-arrayexpress

Desai PolII-4H8

modENCODE_submission_174 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressio...

ORGANISM(S): Caenorhabditis elegans

2010-07-07 | E-GEOD-22669 | biostudies-arrayexpress

Desai ABAB817_8WG16_N2_EEMB

modENCODE_submission_3544 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...

ORGANISM(S): Caenorhabditis elegans

2012-04-22 | E-GEOD-37498 | biostudies-arrayexpress

Desai ABAB817_8WG16_N2_LTEMB

modENCODE_submission_3545 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...

ORGANISM(S): Caenorhabditis elegans

2012-04-22 | E-GEOD-37499 | biostudies-arrayexpress

Epigenetic marks reduce erythrocyte uptake of antimalarials

Acquired antimalarial drug resistance produces treatment failures and has led to periods of global disease resurgence. In P. falciparum, resistance is known to arise through genome-level changes such as mutations and gene duplications. We now report an epigenetic resistance mechanism involving genes...

ORGANISM(S): Plasmodium falciparum

2013-06-03 | E-GEOD-47579 | biostudies-arrayexpress

Long-term evaluation of sperm parameters after coronavirus disease 2019 messenger ribonucleic acid vaccination.

Not available

S-EPMC9345661 | biostudies-literature

MuRF1 regulation of Fenofibrateâ€™s induction of spontaneous cardiac hypertrophy in vivo.

MuRF1 -/- w/ Fenofibrate treatment leads to the reduction of proteolytic and fibrolytic enzymes, increasing hypertrophy Four strain-matched groups of 3-8 week old mice were investigated: 1) MuRF1 -/- Fenofibrate feed; 2) MuRF1 -/- chow feed; 3) MuRF1 +/+ Fenofibrate feed; 4) MuRF1 +/+ chow feed at...

ORGANISM(S): Mus musculus

2016-03-01 | E-GEOD-68480 | biostudies-arrayexpress

Mechanistic studies of a novel C-S lyase in ergothioneine biosynthesis: the involvement of a sulfenic acid intermediate.

Not available

S-EPMC4493562 | biostudies-literature

Desai SDQ0804_HCP3_N2_LTEMB

modENCODE_submission_3543 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...

ORGANISM(S): Caenorhabditis elegans

2013-10-30 | E-GEOD-51918 | biostudies-arrayexpress

Desai OD00079_HCP3_N2_LTEMB

modENCODE_submission_3542 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...

ORGANISM(S): Caenorhabditis elegans

2013-10-30 | E-GEOD-51917 | biostudies-arrayexpress

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2716 Results

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