Deshpande A A - OmicsDI

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IsPrivate

False (1)

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FAIR-AIML (1)
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First Public Date

2023 (3)

Modelling Approach

Machine learning (1)

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Transcription profiling by array (21)
RNA-seq of coding RNA (8)
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Lab affiliation

School of Biotechnology and Biomolecular Sciences (2)
The Charles Perkins Centre, University of Sydney, Australia (2)
AG Proteomics & Bioanalytics Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel 24105 Kiel, Germany (1)
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Department of Medical Biochemistry and Cell biology, University of Gothenburg (1)
Department of Pharmacology | UW School of Medicine Institute of Stem Cell and Regenerative Medicine | University of Washington, Seattle, USA (1)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (1)
Département de biochimie Faculté de Médecine Université de Montréal (1)
Epithelial Systems Biology Laboratory, NHLBI, NIH (1)
Head of Protein Structure facility, Friedrich Miescher Institute for Biomedical Research (1)
Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Bonn, Germany (1)
Institute of Molecular Biology (IMB) (1)
Jiangsu Academy of Agricultural Sciences (1)
Leonard P Ullmann Chair in Metabolic Systems Biology, School of Life and Environmental Sciences and Sydney Medical School D17 - Charles Perkins Centre | The University of Sydney | NSW | 2006 (1)
Proteomics and Cancer Cell Signaling, DKFZ Heidelberg (1)
School of Life and Environmental Sciences, The University of Sydney, Australia (1)
The Rockefeller University (1)
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Turku Bioscience Centre, University of Turku and Åbo Akademi University (1)
Turku Bioscience, Abo Akademi and University of Turku (1)
University of Texas at Austin, College of Natural Sciences, Department of Molecular Biosciences (1)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (1)

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The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis

Drastic alteration in macronutrients causes large changes in gene expression in the photosynthetic unicellular alga Chlamydomonas reinhardtii. Preliminary data suggested that cells follow a biphasic response to this change hinging on the initiation of lipid accumulation, and we hypothesized that ...

2015-06-29 | MTBLS208 | MetaboLights

Deshpande2019 - Random Forest model to predict long non-coding RNAs from coding RNAs in Zea Mays plant transcriptomic data

This is a Random Forest algorithm-based machine learning model to predict lncRNAs from coding mRNAs in plant transcriptomic data. The model assigns 1 for coding sequences and 2 for long non-coding sequences. The prediction is performed using a combination of Open Reading Frame (ORF) based, Sequence-...

2024-12-09 | BIOMD0000001067 | BioModels

Machine Learning Model FAIR-AIML

Histone 3 lysine 4 monomethylation supports activation of transcription in S. cerevisiae during nutrient stress.

Not available

S-EPMC8976815 | biostudies-literature

Hepatocellular carcinoma: A comprehensive review.

Not available

S-EPMC4651909 | biostudies-literature

Campylobacter concisus strain BAA-1547 GeLC-MSMS

Bacteria were washed three times in NaCl (150 mM). Cells were resuspended in 1 ml TSU buffer (50 mM Tris pH 8.0, 0.1% SDS, 2.5 M urea) and lysed by two freeze-thaw cycles in liquid nitrogen. Lysate proteins (40 ug) were separated and digested. Digested peptides were separated by nano-LC using an U...

ORGANISM(S): Campylobacter concisus (strain 13826)

2014-04-28 | PXD000504 | Pride

Concisus Gelc-msms Campylobacter

Campylobacter concisus UNSWCD GeLC-MSMS

Washed three times in NaCl (150 mM). Cells were resuspended in 1 ml TSU buffer (50 mM Tris pH 8.0, 0.1% SDS, 2.5 M urea) and lysed by two freeze-thaw cycles in liquid nitrogen. Lysate proteins (40 ug) were separated and digested. Digested peptides were separated by nano-LC using an Ultimate 3000 ...

ORGANISM(S): Campylobacter concisus UNSWCD

2014-04-28 | PXD000505 | Pride

Concisus Gelc-msms Campylobacter

Expression data from a human MLL-AF6 positive AML cell line

The MLL gene on chromosome 11 fuses to the AF6 gene on chromosome 6 in a balanced chromosomal translocation that is characetristic of certain adult and pediatric human leukemias. We established a murine leukemia model of MLL-AF6 using the retroviral MLL-AF6 contruct in a bone marrow transplantation ...

ORGANISM(S): Homo sapiens

2013-04-03 | E-GEOD-43068 | biostudies-arrayexpress

Identification of a Potently Oncogenic CALM-AF10 Minimal-Fusion Mutant (miRNA)

The t(10;11) p (13;q14) translocation, giving rise to CALM-AF10, is a recurring chromosomal translocation observed in several types of acute leukemias as well as in lymphoma. We have previously demonstrated that the expression of the human CALM/AF10 fusion gene in murine bone marrow stem and progeni...

ORGANISM(S): Mus musculus

2011-10-04 | E-GEOD-27512 | biostudies-arrayexpress

Facilitating healthy coping in patients with diabetes: a systematic review.

Not available

S-EPMC3549032 | biostudies-literature

Identification of a Potently Oncogenic CALM-AF10 Minimal-Fusion Mutant (mRNA)

ORGANISM(S): Mus musculus

2011-10-04 | E-GEOD-27513 | biostudies-arrayexpress

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