Desulfovibrio - OmicsDI

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Unknown (912)
Genomics (396)
Transcriptomics (119)
Proteomics (37)
Metabolomics (9)
Other (1)

Organisms

Nitratidesulfovibrio vulgaris str. Hildenborough (41)
Mus musculus (9)
Oleidesulfovibrio alaskensis G20 (9)
Nitratidesulfovibrio vulgaris (5)
Marvinbryantia formatexigens DSM 14469 (4)
Desulfovibrio piger GOR1 (4)
[Clostridium] symbiosum (4)
Agathobacter rectalis ATCC 33656 (4)
Bacteroides caccae ATCC 43185 (4)
Bacteroides ovatus ATCC 8483 (4)
Collinsella aerofaciens ATCC 25986 (4)
Bacteroides thetaiotaomicron VPI-5482 (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Methanococcus maripaludis S2 (2)
Dehalococcoides mccartyi 195 (2)
Desulfovibrio ferrophilus (2)
Methanobacterium congolense (1)
Blautia hydrogenotrophica DSM 10507 (1)
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay (1)
Pelosinus fermentans DSM 17108 (1)
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 (1)
Dehalococcoides mccartyi VS (1)
Dehalococcoides mccartyi CBDB1 (1)
Dehalococcoides mccartyi BAV1 (1)
Pseudodesulfovibrio piezophilus C1TLV30 (1)
Dehalococcoides mccartyi (1)
Oleidesulfovibrio alaskensis (1)
Bacteria (1)
Bos taurus (1)
Homo sapiens (1)

Organisms

Nitratidesulfovibrio vulgaris str. Hildenborough (37)
Nitratidesulfovibrio vulgaris (13)
Oleidesulfovibrio alaskensis G20 (11)
Desulfovibrio desulfuricans (6)
Mus musculus (6)
Homo sapiens (5)
Desulfovibrio legallii (4)
Desulfovibrio ferrophilus (4)
mouse gut metagenome (4)
Solidesulfovibrio magneticus (3)
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 (3)
Desulfovibrio aminophilus (3)
Desulfovibrio sp. (3)
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay (2)
Solidesulfovibrio magneticus RS-1 (2)
Desulfovibrio sp. DS-1 (2)
Desulfolutivibrio sulfoxidireducens (2)
Oleidesulfovibrio alaskensis (2)
Pseudodesulfovibrio mercurii (2)
Oceanidesulfovibrio marinus (2)
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 (2)
Maridesulfovibrio gilichinskyi (2)
Desulfovibrio psychrotolerans (2)
Nitratidesulfovibrio vulgaris str. 'Miyazaki F' (2)
Desulfovibrio sp. S5 (2)
Desulfovibrio (2)
Desulfovibrio falkowii (2)
Pseudodesulfovibrio piezophilus C1TLV30 (2)
Dehalococcoides mccartyi (2)
bioreactor metagenome (2)

Repository

ENA (393)
geo (71)
biostudies-arrayexpress (50)
pride (19)
MassIVE (13)
MetaboLights (7)
iProX (5)
NODE (2)
GNPS (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (4)
Cell suspension culture (2)
Bacterial cells (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (10)
Mass spectrometry (6)
Bottom-up proteomics (5)
Data-dependent acquisition (5)
Mass spectrometry assay (1)
ESI (1)
Data-independent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Elite (6)
Liquid Chromatography MS - negative - reverse phase (3)
LTQ Orbitrap Velos (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
4800 Proteomics Analyzer (1)
ACQUITY UPLC (1)
LTQ (1)
LTQ FT (1)
LTQ Orbitrap (1)
LTQ XL (1)
Orbitrap Eclipse (1)
QSTAR XL (1)
SYNAPT G2-Si (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2011 (26)
2013 (20)
2010 (19)
2025 (13)
2008 (11)
2012 (9)
2024 (8)
2023 (7)
2016 (7)
2015 (7)
2007 (6)
2006 (5)
2026 (5)
2009 (4)
2022 (4)
2018 (4)
2020 (3)
2017 (3)
2021 (3)
2019 (1)
2014 (1)

Metabolite Name

7-hydroxy-2-(4-hydroxy-3-methoxyphenyl)-3,5-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-1<U+00CE><U+00BB><U+00E2><U+0081><U+00B4>-chromen-1-ylium (1)
Quercetin 3-(6''-acetylglucoside) (1)
5-hydroxy-2-(4-hydroxyphenyl)-7-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-1-benzopyran-4-one (1)
Apigenin 7-O-beta-D-glucoside (1)
Quercetin 4',7-diglucoside (1)
(5Z,9E,14Z)-(8xi,11R,12S)-11,12-epoxy-8-hydroxyicosa-5,9,14-trienoic Acid (1)
Cis-7,10,13,16-Docosatetraenoic acid (1)
Demethylnobiletin (1)
4-Methoxybenzoate (1)
2,5-Dihydroxybenzoate (1)
Pteroyl-D-glutamic acid (1)
(-)-Epicatechin 3-O-gallate (1)
(3'alpha,5'alpha,9'xi,10'beta)-O-(3-Hydroxy-7-drimen-11-yl)umbelliferone (1)
BICINE (1)
Desmethylxanthohumol (1)
Cyanidin 3-sambubioside 5-glucoside (1)
Gibberellin A54 (1)
Melanin (1)
Fenitrothion (1)
Glechomafuran (1)
Gibberellin A124 (1)
Macelignan (1)
M-toluic Acid (1)
11,12-Dimethoxydihydrokawain (1)
2-Methoxyestradiol (1)
Bosentan (1)
Liriodendrin (1)
2-(N-Methyl-perfluorooctane sulfanamido) acetic acid (1)
7alpha,8alpha-Dihydroxycalonectrin (1)
Austalide D (1)

First Public Date

2013 (82)
2014 (55)
2020 (37)
2019 (27)
2025 (26)
2024 (26)
2017 (26)
2026 (23)
2016 (22)
2022 (21)
2023 (17)
2018 (13)
2021 (10)
2015 (7)
2012 (1)

Classification

viruses (2)

Study type

Transcription profiling by array (36)
Unknown experiment type (5)
RNA-seq of coding RNA (5)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2023 (116)
2022 (106)
2024 (84)
2021 (80)
2025 (77)
2020 (62)
2017 (46)
2018 (44)
2019 (43)
2016 (30)
2015 (27)
2011 (27)
2013 (26)
2014 (26)
2012 (24)
2010 (24)
2009 (17)
2008 (15)
2007 (14)
2006 (12)
2026 (11)
2004 (8)
2002 (8)
2000 (8)
2001 (7)
2003 (6)
1998 (6)
2005 (4)
1999 (4)

Lab affiliation

Wageningen University (3)
Advanced Water Managment Center, The University of Queensland (1)
Bioprocess Engineering, Otto von Guericke University Magdeburg, Magdeburg, Germany Max Planck Institute for Dynamics of Complex Technical Systems, Bioprocess Engineering, Magdeburg, Germany. (1)
Civil and Environmental Engineering, James H Clark Center Room E250, Stanford University, CA United States (1)
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota (1)
Department of Microbiology and Plant Biology School of Computer Science University of Oklahoma (1)
Department of Plant and Microbial Biology, University of California, Berkeley, USA (1)
Dr Thierry Le Bihan Quantitative Proteomics lecturer and technology lead Institute of Structural and Molecular Biology SynthSys – Synthetic and Systems Biology School of Biological Sciences, University of Edinburgh Room 3.06, C.H Waddington Building, Max Born Crescent Edinburgh, EH9 3BF Phone +44 (0)131 651 9073 thierry.lebihan@ed.ac.uk (1)
ETH Zürich D-BIOL Institute of Molecular Biology and Biophysics Otto-Stern-Weg 5 8093 Zürich Switzerland (1)
ExxonMobil Research and Engineering Company (1)
Institute of Oceanology, Chinese Academy of Sciences (1)
Molecular Environmental Biotechnology, UFZ, Leipzig, Germany (1)
Proteomic Platform of Institut de Microbiologie de la Mediterranee CNRS FR 3479 Marseille Proteomique (1)
School of Biological Sciences, University of Oklahoma, Norman, OK, USA (1)
Sun Yat-sen University (1)
University of Calgary, Microbiology (1)
University of Oklahoma, Norman, OK, USA (1)

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Cell wide response to air exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of air exposure on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: stress response, time course Comparison of cells treated with air to untreated cells at 0,10,30,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-08 | E-GEOD-8196 | biostudies-arrayexpress

Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough

We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress

Pyruvate fermentation vs Lactate-Sulfate

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

Nitrate Stress in Desulfovibrio vulgaris Hildenborough

Using data from microarray experiments, we investigated the effects of excess sodium nitrate on Desulfovibrio vulgaris. Keywords: stress response, time course Comparison of cells treated with 105 mM sodium nitrate to untreated cells at times of 0, 30, 60, 120, and 240 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-22 | E-GEOD-20079 | biostudies-arrayexpress

Energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough

This SuperSeries is composed of the following subset Series: GSE8015: Pyruvate fermentation vs Lactate-Sulfate GSE8037: Hydrogen vs Lactate as electron donor in Sulfate reduction GSE8071: Pyruvate vs Lactate as electron donor in Sulfate reduction GSE8072: Thiosulfate vs Sulfate as electron acceptor ...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-04-05 | E-GEOD-8069 | biostudies-arrayexpress

Hydrogen vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress

Pyruvate vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress

Acetone stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Ethanol stress response in Desulfovibrio vulgaris

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-24 | E-GEOD-7489 | biostudies-arrayexpress

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