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ProteomicsiPRG 2012: A Study on Detecting Modified Peptides in a Complex Mixture
This is the data and results associated with the 2012 study organized by the proteome informatics research group of the Association of Biomolecular Resource Facilities, which investigated participants' ability to identify a range of post-translationally modified peptides spiked into a yeast lysate b...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2013-11-19 | MSV000078492 | MassIVE
TranscriptomicsHalobacterium salinarum NRC-1 growth curve, tiling arrays
Experimentally mapped transcriptome structure of H. salinarum NRC-1 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes with 40 nt overlap between contiguous probes). H. salinarum NRC-1 presents a number of interesting switches in metabol...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-17 | E-GEOD-12923 | biostudies-arrayexpress
OtherA Candida albicans PeptideAtlas.
Data from PeptideAtlas, [[http://www.peptideatlas.org/PASS/PASS00408 PASS00408]]. File: SC5314_vesicles_2_CGD21.mzml. Published as part of J Proteomics. 2014 Jan 31;97:62-8 .From the Abstract: {{i}} Candida albicans public proteomic datasets, though growing steadily in the last few years, still hav...
ORGANISM(S): Candida_albicans 
GPM11210027715 | GPMDB
ProteomicsL.interrogans - Whole organism, Original spectral counting data, control normalized data (Malmström,nature,2009)
abundance based on control normalized data, Original spectral counting data, Interaction consistency score: 1.8, Coverage: 44
ORGANISM(S): 189518 
2009-00-00 | 2109576622 | PAXDB
ProteomicsL.interrogans - Whole organism, Ms1 quantification data, MS1 normalized data (Malmström,nature,2009)
abundance based on MS1 normalized data, MS1 quantification data, Interaction consistency score: 1.2, Coverage: 17
ORGANISM(S): 189518 
2009-00-00 | 225164180 | PAXDB
ProteomicsL.interrogans - Whole organism, SC (Malmström,nature,2009)
abundance based on Spectral counting, Interaction consistency score: 7.8, Coverage: 56
ORGANISM(S): 189518 
2009-00-00 | 748087191 | PAXDB
ProteomicsA tissue-based draft map of the murine MHC class I immunopeptidome
The array of peptides presented to CD8+ T cells by major histocompatibility complex (MHC) class I molecules is referred to as the MHC class I immunopeptidome. Although the MHC class I immunopeptidome is ubiquitous in mammals and represents a critical component of the adaptive immune system, very lit...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-02-19 | MSV000084980 | MassIVE
ProteomicsPTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline
Analysis of synthetic peptide reference datasets to demonstrate the performance of PTMProphet, a free and open-source software tool integrated into the Trans-Proteomic Pipeline, which reanalyzes identified spectra from any search engine for which pepXML output is available to provide localization co...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-01-10 | MSV000096828 | MassIVE
ProteomicsLi_LTQFT_incl
Li_LTQFT_incl
ORGANISM(S): Leptospira Interrogans 
2009-12-31 | PAe000401 | PeptideAtlas
ProteomicsLi_spores_MALDI_iTRAQ
Li_spores_MALDI_iTRAQ
ORGANISM(S): Leptospira Interrogans 
2009-12-31 | PAe000383 | PeptideAtlas
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