Sort   by:  
 Page size 
GenomicsA Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis
Deletion of caudal/cdx genes alters hox gene expression and causes defects in posterior tissues and hematopoiesis. Yet, the defects in hox gene expression only partially explain these phenotypes. To gain deeper insight into Cdx4 function, we performed ChIP-seq combined with gene expression profiling...
ORGANISM(S): Danio rerio 
2013-12-02 | E-GEOD-48254 | biostudies-arrayexpress
GenomicsZebrafish Globin Locus
This SuperSeries is composed of the following subset Series: GSE35874: Zebrafish Globin Locus (ChIP-seq) GSE35875: Zebrafish Globin Locus (DNAse) Refer to individual Series
ORGANISM(S): Danio rerio 
2012-02-17 | E-GEOD-35895 | biostudies-arrayexpress
TranscriptomicsGene Expression analysis of transgenic RAS heatshock zebrafish embryos at 30 hpf
Heterogeneous Tg(hsp70-hRASG12V) embryos were obtained by mating the male homozygous transgenic fish to wildtype females. They were raised to 24 hour-post fertilization (hpf) stage and received heatshock at 37°C in waterbath for one hour, and kept in 28.5°C till 30hpf for RNA extraction. Wildtype em...
ORGANISM(S): Danio rerio 
2013-02-16 | E-GEOD-44364 | biostudies-arrayexpress
TranscriptomicsZebrafish whole embryos at 36 hpf treated with DMSO or 5uM 11,12-EET
In our previous study, we found zebrafish embryos treated with 5uM 11,12-EET (epoxyeicosatrienoic acid) had increased stem cell marker, runx1, expression in the AGM. EET also induced ectopic runx1 expression in the tail. To systematically study how EET regulates gene expression, we performed microar...
ORGANISM(S): Danio rerio 
2012-07-27 | E-GEOD-39707 | biostudies-arrayexpress
GenomicsZebrafish Globin Locus (ChIP-seq)
Genome-wide analysis of H3K4me3 modifications, Gata1 binding, and DNase I hypersensitivity sites in zebrafish adult red blood cells Zebrafish red cells from 10 adults were isolated for each ChIP-seq reaction. The red cells were cross-linked with formaldehyde for 20 min. DNA fragements bound by spec...
ORGANISM(S): Danio rerio 
2012-02-17 | E-GEOD-35874 | biostudies-arrayexpress
GenomicsZebrafish Globin Locus (DNAse)
Genome-wide analysis of H3K4me3 modifications, Gata1 binding, and DNase I hypersensitivity sites in zebrafish adult red blood cells Zebrafish peripheral blood nuclei were isolated for DNase I hypersensitivity assays. Total DNA were purified using the Proteinase K digestion and Phenol-Chloroform ext...
ORGANISM(S): Danio rerio 
2012-02-17 | E-GEOD-35875 | biostudies-arrayexpress
TranscriptomicsExpression data for Mobilized Peripheral Blood CD34+ cells with Wnt or BMP stimulation
Analysis of mobilized peripheral blood CD34+ cells from a healthy volunteer under erythroid differentiation conditions with and without stimulation to the BMP or Wnt signaling pathways. For erythroid differentiation, expanded CD34+ cells were placed in Stemspan SFEM medium supplemented with 2% pen/s...
ORGANISM(S): Homo sapiens 
2011-10-06 | E-GEOD-26351 | biostudies-arrayexpress
Sort   by:  
 Page size