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University of Southern Denmark Department of biochemistry and molecular biology Protein research group (1)

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microRNAs in C. elegans, P. pacificus, and S. ratti: Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes

Animal development is complex yet surprisingly robust. Animals may develop alternative phenotypes conditional on environmental changes. Under unfavorable conditions C. elegans larvae enter the dauer stage, a developmentally arrested, long-lived, and stress-resistant state. Dauer larvae of free-livin...

ORGANISM(S): Pristionchus pacificus

2013-07-04 | E-GEOD-41402 | biostudies-arrayexpress

PBMC response to B. pertussis filamentous hemagglutinin stimulation in vitro

Filamentous hemagglutinin (FHA), Bordetella pertussis' key adhesin, is both present at the cell surface and released in the extracellular milieu. To comprehend the role free FHA plays in the pathogenic process, we analyzed the global transcriptional changes in human peripheral blood mononuclear cell...

ORGANISM(S): Homo sapiens

2008-10-29 | E-GEOD-8802 | biostudies-arrayexpress

C. elegans: Dauers and Dauer-Exit at 12 hour time-point vs. Mix-stage worms

Transcriptional profiling of C. elegans worms from (1) dauer stage, or (2) dauer-exit at 12 hours stage, compared to mix-stage worms as a common reference. The goal was to determine genes regulated during dauer development and recovery or exit from dauer stage. This data was then compared to data g...

ORGANISM(S): Caenorhabditis elegans

2011-07-27 | E-GEOD-30977 | biostudies-arrayexpress

Ψ-co-mAFiA: concurrent detection of pseudouridine and m6A in single RNA molecules.

Not available

S-EPMC12552086 | biostudies-literature

circtools-a one-stop software solution for circular RNA research.

Not available

S-EPMC6596886 | biostudies-literature

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals

Circular RNAs (circRNAs) are a large class of animal RNAs. To investigate possible circRNA functions, it is important to understand circRNA biogenesis. Besides human Alu repeats, sequence features that promote exon circularization are largely unknown. We experimentally identified new circRNAs in C. ...

ORGANISM(S): Caenorhabditis elegans

2015-01-06 | E-GEOD-63823 | biostudies-arrayexpress

On the optimal design of metabolic RNA labeling experiments.

Not available

S-EPMC6699717 | biostudies-literature

Successful Re-treatment of Hepatitis C Virus in Patients Coinfected With HIV Who Relapsed After 12 Weeks of Ledipasvir/Sofosbuvir.

Not available

S-EPMC4967607 | biostudies-literature

Characterizing alternative splicing effects on protein interaction networks with LINDA.

Not available

S-EPMC10311343 | biostudies-literature

MePMe-seq: antibody-free simultaneous m⁶A and m⁵C mapping in mRNA by metabolic propargyl labeling and sequencing.