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GenomicsHypermutation of the inactive X chromosome is a frequent event in cancer
Mutation is a fundamental process in tumorigenesis. However the degree to which the rate of somatic mutation varies across the human genome and the mechanistic basis underlying this variation remain to be fully elucidated. As part of the ICGC PedBrain and Malignant Lymphoma (MMML-Seq) consortium we ...
EGAS00001000565 | EGA
GenomicsWGSeq_HealthyHuman_DATA_SET_xmas_MB_2013_07_10 - samples
HSC73_clone: Bone marrow mononuclear cells from the healthy 73 years old female were thawed and labeled with Alexa-Fluor 488-conjugated anti-CD34 (581, Biolegend), Alexa-Fluor 700-conjugated anti-CD38 (HIT2, eBioscience), a cocktail of APC-conjugated lineage antibodies consisting of anti-CD4 (RPA-T4...
EGAD00001000666 | EGA
GenomicsWGSeq_PreMalignant_DATA_SET_xmas_MB_2013_07_10 - samples
Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed. Sample derived from secondary myelodysplastic syndrome (MDS...
EGAD00001000665 | EGA
GenomicsWGS_DATA_SET_storm_MMML_2013_07_10 - samples
ICGC MMML-seq Data Freeze July 2013 whole genome sequencing
EGAD00001000645 | EGA
GenomicsRNA-Seq_DATA_SET_storm_MMML_2013_07_10 - samples
ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing
EGAD00001000648 | EGA
GenomicsmiRNA-Seq_DATA_SET_storm_MMML_2013_07_10 - samples
ICGC MMML-seq Data Freeze July 2013 miRNA sequencing
EGAD00001000650 | EGA
GenomicsWGSeq_RNAseq_ChIPseq_Cancer_ICGC_DATA_SET_xmas_MB_2013_07_10 - samples
Whole Genome Seq: Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed. Paired-end RNA sequencing reads were mapp...
EGAD00001000664 | EGA
Genomicswxs_DATA_SET_MMML_2012_11_06 - samples
ICGC MMML-seq Data Freeze November 2012 whole exome sequencing
EGAD00001000279 | EGA
Genomicswgs_DATA_SET_MMML_2012_11_06 - samples
ICGC MMML-seq Data Freeze November 2012 whole genome sequencing
EGAD00001000278 | EGA
Genomicswgs_data_freeze_march_2013_DATA_SET_MMML_2012_11_06 - samples
ICGC MMML-seq Data Freeze March 2013 whole genome sequencing
EGAD00001000355 | EGA
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